markov-state-model
There are 14 repositories under markov-state-model topic.
deeptime-ml/deeptime
Python library for analysis of time series data including dimensionality reduction, clustering, and Markov model estimation
markovmodel/PyEMMA
🚂 Python API for Emma's Markov Model Algorithms 🚂
markovmodel/msmtools
Tools for estimating and analyzing Markov state models
bowman-lab/enspara
Modeling molecular ensembles with scalable data structures and parallel computing
sbhakat/AF-cryptic-pocket
Cryptic pocket prediction using AlphaFold 2
sonidosmutantes/apicultor
[Deprecated] py2.7 API.Cultor: Another BigData approach to sound collections
BioKT/MasterMSM
Python package for generating Markov state models
Kitaolab/PaCS-Toolkit
PaCS-Toolkit: Optimized software utilities for PaCS-MD and following analysis
matsunagalab/tutorial_hmm
Hands-on tutorials for Markov state modeling of MD and EXP data
liyigerry/gp120
Data, methods and code for research on the molecular dynamics of HIV glycoprotein gp120
sbhakat/MSM-ring-flipping
Predicting kinetics of aromatic side-chain flipping using Markov State Model
eguarnera/ChromaSEP
ChromaSEP
eguarnera/ChromaWalker
ChromaWalker
sbhakat/PMV
Scripts used for MSM and post-dynamics analysis of PMV simulations