mass-spectrometry-imaging
There are 20 repositories under mass-spectrometry-imaging topic.
AlanRace/SpectralAnalysis
Software for the analysis and interactive exploration of spectral imaging data
m2aia/m2aia
Mass spectrometry imaging applications for interactive analysis in MITK (M²aia)
AlanRace/imzMLConverter
Tool for converting mass spectrometry data to the imzML format.
gmrukwa/divik
Divisive Intelligent K-Means algorithm (DiviK) for joint feature selection and clustering of heavily multidimensional data.
novak-jiri/cyclobranch
A tool for mass spectrometry data analysis.
mjoppich/pIMZ
This framework allows to perform scRNA-seq-like analyses of imaging mass-spectrometry data. Check out the example jupyter-notebook in examples/
kbseah/mass2adduct
Analysis of matrix-metabolite adducts in MALDI mass spectrometry imaging datasets
m2aia/pym2aia
pyM²aia is a Python package for memory-efficient access and processing of mass spectrometry image data. The I/O functionality is derived from the interactive desktop application M²aia. Special features are the batch generator utilities for deep learning applications.
YonghuiDong/ShinyCardinal
Shiny App for Mass Spectrometry Imaging
Immunodynamics-Engel-Lab/msiflow
collection of mass spectrometry imaging workflows
piplus2/SPUTNIK
SPUTNIK R package
imzML/imzML
A common data format for mass spectrometry imaging
spectre-team/spectre
This project provides an Spectre's implementation of Data Mining Group's algorithms for processing mass spectrometry imaging (MSI) datasets.
gmrukwa/msi-preprocessing-pipeline
Default preprocessing pipeline for MSI data in raw ASCII format based on Gaussian Mixture Modeling (GMM)
jamzad/SlicerMassVision
A 3D Slicer module for end-to-end analysis of mass spectrometry imaging data
leorrose/SLGC-tissue-similarity-and-grading
Nondestructive Spatial Lipidomics for Glioma Classification - Tissue Similarity and Grading
piplus2/ion_colocalization
Scripts used for the paper Inglese, P., Correia, G., Pruski, P., Glen, R. C., & Takats, Z. (2019). Colocalization features for classification of tumors using desorption electrospray ionization mass spectrometry imaging. Analytical chemistry.
zaritskylab/SLGC-tissue-similarity-and-grading
Nondestructive Spatial Lipidomics for Glioma Classification - Tissue Similarity and Grading
lukasz-migas/IMSC_2018_poster
Repository of materials used in poster for IMSC 2018
YonghuiDong/MSI_Colocalization
Demo code for publication PICA