maximum-likelihood

There are 102 repositories under maximum-likelihood topic.

  • lifelines

    CamDavidsonPilon/lifelines

    Survival analysis in Python

    Language:Python2.5k65983564

  • 3dem/relion

    Image-processing software for cryo-electron microscopy

    Language:C++504451.2k222

  • amkozlov/raxml-ng

    RAxML Next Generation: faster, easier-to-use and more flexible

    Language:C++4401719364

  • Cibiv/IQ-TREE

    Efficient phylogenomic software by maximum likelihood

    Language:C++2031723744

  • stan-dev/cmdstanr

    CmdStanR: the R interface to CmdStan

    Language:R1551657565

  • cogent3/cogent3

    Comparative Genomics Toolkit 3

    Language:Python133960265

  • jamiemcg/BUSCO_phylogenomics

    BUSCO Phylogenomics | Utility script to construct species phylogenies using BUSCO proteins

    Language:Python8342313

  • vinuesa/get_phylomarkers

    A pipeline to select optimal markers for microbial phylogenomics and species tree estimation using the multispecies coalescent and concatenation approaches

    Language:Perl594189

  • jkirkby3/pymle

    Maximum Likelihood estimation and Simulation for Stochastic Differential Equations (Diffusions)

    Language:Python541413

  • r-spatial/spatialreg

    spatialreg: spatial models estimation and testing

    Language:R5284711
  • dynamic-discrete-choice

    jabbring/dynamic-discrete-choice

    Matlab package for learning to specify, compute, and estimate dynamic discrete choice models

    Language:MATLAB490639

  • grenaud/deML

    Maximum likelihood demultiplexing

    Language:C++4862014

  • odubno/gauss-naive-bayes

    Gauss Naive Bayes in Python From Scratch.

    Language:Python452021

  • evolbioinfo/pastml

    Ancestral character reconstruction and visualisation for rooted phylogenetic trees

    Language:Python378257

  • pachadotdev/gravity

    R package that provides estimation methods for Gravity Models

    Language:R3711813

  • viodotcom/ppca_rs

    Python+Rust implementation of the Probabilistic Principal Component Analysis model

    Language:Rust36422

  • gokhanntosun/channel-estimation

    Channel estimations based on RLS, LMS and ML methods.

    Language:MATLAB351210
  • phylociraptor

    reslp/phylociraptor

    rapid phylogenomic tree calculator - A highly customizable framework for reproducible phylogenomic inference

    Language:Python274126

  • vinuesa/TIB-filoinfo

    Talleres Internacionales de Bioinformática - Centro de Ciencias Genómicas, UNAM, Cuernavaca, México

    Language:Shell26006

  • docnok/detection-estimation-learning

    Python notebooks for my graduate class on Detection, Estimation, and Learning. Intended for in-class demonstration. Notebooks illustrate a variety of concepts, from hypothesis testing to estimation to image denoising to Kalman filtering. Feel free to use or modify for your instruction or self-study.

    Language:Jupyter Notebook23009

  • mashephe/AmpTools

    A utility library for performing amplitude analysis on particle physics data.

    Language:C++2294213

  • Ensembl/treebest

    TreeBeST: Tree Building guided by Species Tree (Ensembl Compara modifications)

    Language:C21808

  • apallath/WHAM

    Python package to construct free energy profiles from biased molecular simulation data using both log-likelihood maximization and self-consistent iteration approaches.

    Language:Python201221

  • mackelab/CorBinian

    CorBinian: A toolbox for modelling and simulating high-dimensional binary and count-data with correlations

    Language:MATLAB19434

  • fpv-iplab/Differentiable-Task-Graph-Learning

    Code for the paper "Differentiable Task Graph Learning: Procedural Activity Representation and Online Mistake Detection from Egocentric Videos" [NeurIPS (spotlight), 2024]

    Language:Python17322

  • ddegras/switch-ssm

    Markov-Switching State-Space Models

    Language:MATLAB15218

  • jkirkby3/BsplineDensity

    B-Spline Density Estimation Library - nonparametric density estimation using B-Spline density estimator from univariate sample.

    Language:MATLAB15103

  • 4ment/physher

    A multi-algorithmic framework for phylogenetic inference

    Language:C14622

  • justincbagley/piranha

    Scripts for file processing and analysis in phylogenetics and phylogeography

    Language:Shell13263

  • oguzhan-baser/Channel-Estimation

    Estimating unknown static channel coefficients on a communication system utilizing Maximum Likelihood Single-Shot Estimation algorithm.

    Language:MATLAB12104

  • JonasMoss/univariateML

    An R package for maximum likelihood estimation of univariate densities.

    Language:R91436

  • welschma/TemplateFitter

    Perform template likelihood fits on binned datasets to extract contribution to the dataset from different processes .

    Language:Python9211

  • egarpor/sdetorus

    Statistical tools for toroidal diffusions. Software companion for "Langevin diffusions on the torus: estimation and applications"

    Language:C++7201

  • lkazantzi/tilted-cosmology

    The numerical analysis files corresponding to arxiv: 2202.00962

    Language:Mathematica7104

  • markjolah/Mappel

    Maximum a posteriori Point Emitter Localization -- High-performance, parallel, robust, cross-platform localization for EMCCD and SCMOS microscopy.

    Language:C++6201

  • xRiskLab/fastwoe

    Fast Weight of Evidence (WOE) encoding and inference

    Language:Python60