maximum-parsimony

There are 8 repositories under maximum-parsimony topic.

yatisht/usher
Ultrafast Sample Placement on Existing Trees
Language:C++122 12 15341
yatisht/strain_phylogenetics
Tools for analyzing and comparing SARS-CoV-2 phylogenies
Language:C++9 3 32
UdeM-LBIT/superrec2
Run and compare algorithms for phylogenetic reconciliation and super-reconciliation
Language:Python4 4 01
d-dawg78/COMP561-Final-Project
McGill University - Computational Biology Methods and Research Project
Language:Python2 2 00
kwoehrer/UPGMA-Phylogeny-Parsimony
UPGMA Trait-Based Phlyogenetic Tree Generator With Optional Parsimony Capabilities
Language:Java2 1 00
jasnap/philogenetic_trees
Parallel and sequential algorithms for finding philogenetic trees using Maximum Parsimony. The scoring algorithm used is Fitch scoring algorithm. Exhaustive search and Branch and Bound search algorithms are implemented in sequential variant. SPMD method is used in parallel implementation.
Language:MATLAB1 1 01
kris96tian/Phylogenetic_Tree_Generator
Web App for constructing phylogenetic trees using various clustering methods and algorithms.
Language:HTML0 1 00
Bader-Research/ExactMP
ExactMP: An Efficient Parallel Exact Solver for Phylogenetic Tree Reconstruction Using Maximum Parsimony
Language:C1 3