medical-image-segmentation

There are 297 repositories under medical-image-segmentation topic.

  • PaddlePaddle/PaddleSeg

    Easy-to-use image segmentation library with awesome pre-trained model zoo, supporting wide-range of practical tasks in Semantic Segmentation, Interactive Segmentation, Panoptic Segmentation, Image Matting, 3D Segmentation, etc.

    Language:Python8.8k932.1k1.7k

  • open-mmlab/mmsegmentation

    OpenMMLab Semantic Segmentation Toolbox and Benchmark.

    Language:Python8.4k542.4k2.6k
  • MedicalZooPytorch

    black0017/MedicalZooPytorch

    A pytorch-based deep learning framework for multi-modal 2D/3D medical image segmentation

    Language:Python1.8k3425297
  • awesome-transformers-in-medical-imaging

    fahadshamshad/awesome-transformers-in-medical-imaging

    A collection of resources on applications of Transformers in Medical Imaging.

    1.2k205184

  • AngeLouCN/Min_Max_Similarity

    A contrastive learning based semi-supervised segmentation network for medical image segmentation

    Language:Python1k27396

  • rezazad68/BCDU-Net

    BCDU-Net : Medical Image Segmentation

    Language:Python725841268

  • jeya-maria-jose/UNeXt-pytorch

    Official Pytorch Code base for "UNeXt: MLP-based Rapid Medical Image Segmentation Network", MICCAI 2022

    Language:Python48534477

  • AngeLouCN/CaraNet

    Context Axial Reverse Attention Network for Small Medical Objects Segmentation

    Language:Python46922630

  • DengPingFan/PraNet

    PraNet: Parallel Reverse Attention Network for Polyp Segmentation, MICCAI 2020 (Oral). Code using Jittor Framework is available.

    Language:Python467755123

  • frankkramer-lab/MIScnn

    A framework for Medical Image Segmentation with Convolutional Neural Networks and Deep Learning

    Language:Python40714116116

  • Rubics-Xuan/TransBTS

    This repo provides the official code for : 1) TransBTS: Multimodal Brain Tumor Segmentation Using Transformer (https://arxiv.org/abs/2103.04430) , accepted by MICCAI2021. 2) TransBTSV2: Towards Better and More Efficient Volumetric Segmentation of Medical Images(https://arxiv.org/abs/2201.12785).

    Language:Python39335484

  • jeya-maria-jose/KiU-Net-pytorch

    Official Pytorch Code of KiU-Net for Image/3D Segmentation - MICCAI 2020 (Oral), IEEE TMI

    Language:Python37073679

  • MIC-DKFZ/MedNeXt

    [MICCAI 2023] MedNeXt is a fully ConvNeXt architecture for 3D medical image segmentation.

    Language:Python35993126

  • AngeLouCN/DC-UNet

    We proposed a novel U-Net-based model -- DC-UNet to do medical image segmentation.

    Language:Python3281520

  • uni-medical/STU-Net

    The largest pre-trained medical image segmentation model (1.4B parameters) based on the largest public dataset (>100k annotations), up until April 2023.

    Language:Python29553426

  • NITR098/Awesome-U-Net

    Official repo for Medical Image Segmentation Review: The Success of U-Net

    Language:Jupyter Notebook2944842

  • AngeLouCN/CFPNet-Medicine

    CFPNet-M: A Light-Weight Encoder-Decoder Based Network for Multimodal Biomedical Image Real-Time Segmentation

    Language:Python2851012

  • yhygao/CBIM-Medical-Image-Segmentation

    A PyTorch framework for medical image segmentation

    Language:Python28043049

  • wurenkai/UltraLight-VM-UNet

    [arXiv] The official code for "UltraLight VM-UNet: Parallel Vision Mamba Significantly Reduces Parameters for Skin Lesion Segmentation".

    Language:Python240135834

  • HiLab-git/WSL4MIS

    Scribbles or Points-based weakly-supervised learning for medical image segmentation, a strong baseline, and tutorial for research and application.

    Language:Python21351834

  • xmindflow/Awesome_Mamba

    Computation-Efficient Era: A Comprehensive Survey of State Space Models in Medical Image Analysis

    2025314

  • WZH0120/SAM2-UNet

    SAM2-UNet: Segment Anything 2 Makes Strong Encoder for Natural and Medical Image Segmentation

    Language:Python19133820

  • DebeshJha/ResUNetPlusPlus

    Official code for ResUNetplusplus for medical image segmentation (TensorFlow & Pytorch implementation)

    Language:Python19051541

  • xmindflow/Awesome-Transformer-in-Medical-Imaging

    [MedIA Journal] An ultimately comprehensive paper list of Vision Transformer/Attention, including papers, codes, and related websites

    1872125

  • GewelsJI/VPS

    Official website for "Video Polyp Segmentation: A Deep Learning Perspective (MIR 2022)"

    Language:Python18374428

  • xmindflow/Awesome-Implicit-Neural-Representations-in-Medical-imaging

    [ICCV 2023] A curated list of resources on implicit neural representations in Medical Imaging

    1798217

  • lescientifik/open_brats2020

    Top 10 brats 2020 Solution

    Language:Python16731644

  • josedolz/LiviaNET

    This repository contains the code of LiviaNET, a 3D fully convolutional neural network that was employed in our work: "3D fully convolutional networks for subcortical segmentation in MRI: A large-scale study"

    Language:Python161122852

  • tamasino52/UNETR

    Unofficial code base for UNETR: Transformers for 3D Medical Image Segmentation

    Language:Python1594223

  • Luffy03/VoCo

    [CVPR 2024] VoCo: A Simple-yet-Effective Volume Contrastive Learning Framework for 3D Medical Image Analysis

    Language:Python15822815

  • HiLab-git/WORD

    [MedIA2022]WORD: A large scale dataset, benchmark and clinical applicable study for abdominal organ segmentation from CT image

    Language:Python15261019

  • josedolz/HyperDenseNet

    This repository contains the code of HyperDenseNet, a hyper-densely connected CNN to segment medical images in multi-modal image scenarios.

    Language:Python14911441

  • plemeri/UACANet

    Official PyTorch implementation of UACANet: Uncertainty Augmented Context Attention for Polyp Segmentation (ACMMM 2021)

    Language:Python14931637

  • tianrun-chen/xLSTM-UNet-PyTorch

    Replacing Mamba with xLSTM! It works better. We show that xLSTM-Unet can be an effective semantic segmentation backbone.

    Language:Python14741814

  • Bala93/Multi-task-deep-network

    Usage of Multi-task deep learning network for semantic segmentation in medical images

    Language:Python12771033

  • amirhossein-kz/HiFormer

    HiFormer: Hierarchical Multi-scale Representations Using Transformers for Medical Image Segmentation (WACV 2023)

    Language:Jupyter Notebook1223022