merfish

There are 7 repositories under merfish topic.

emanuega/MERlin
MERlin is an extensible analysis pipeline applied to decoding MERFISH data
Language:Python35 9 2529
HaojiaWu/CellScopes.jl
A Julia package for single cell and spatial data analysis
Language:Julia26 4 112
lhqing/merfishing
Code for MERFISH analysis
Language:Jupyter Notebook6 1 52
ankitbioinfo/nico_tutorial
A package that performs cell type annotations on single cell resolution of spatial transcriptomics data, find the niche interactions and covariation patterns between interacted cell types.
Language:Jupyter Notebook2 1 01
Kur1sutaru/ruichenlabcodes
Single cell ATAC and RNA seq data analysis
Language:Jupyter Notebook2 1 01
li-pearl/gene-count-normalizer
First step of data wrangling in MERFISH data project
Language:Python1 1 00
poloarol/snakemake-vizgen-cell-segmentation
A snakemake pipeline to perform cell segmentation on MERFISH spatial transcriptomics data.
Language:Python0 1 00