metabolic-model
There are 8 repositories under metabolic-model topic.
areias03/tmCOM
GitHub repository to support the development of the thesis "Development of microbial community simulation methods to characterize and analyze the effects of metal concentrations on pathogen silencing/promotion".
pwendering/RhiirGEM
Genome-scale metabolic reconstruction of Rhizophagus irregularis
sysbiomics/aspergillus_model
Improved annotation through genome-scale metabolic modeling of Aspergillus oryzae
SystemsBioinformatics/elementary-mode-based-FBA-rationale
Code that uses Elementary Conversion Mode computation to obtain all relevant conversions for a constraint-based optimization problem, i.e., all possible optimal yields between the constrained nutrients and the objective function. As published in Metabolites https://doi.org/10.3390/metabo11050257
maranasgroup/iRhto_memote
Memote-created repository for Rhodosporidium toruloides model iRhto
maranasgroup/iSace_GSM
Repository of a genome-scale metabolic model for Saccharomyces cerevisiae
pwendering/ArabidopsisCoreModel
Platform for further development of the Arabidopsis core metabolic model
pwendering/AraTModel
Integration of temperature-dependent constraints into a metabolic model of Arabidopsis thaliana