metabolic-model

There are 8 repositories under metabolic-model topic.

  • areias03/tmCOM

    GitHub repository to support the development of the thesis "Development of microbial community simulation methods to characterize and analyze the effects of metal concentrations on pathogen silencing/promotion".

    Language:Jupyter Notebook1100

  • pwendering/RhiirGEM

    Genome-scale metabolic reconstruction of Rhizophagus irregularis

    Language:HTML1100

  • sysbiomics/aspergillus_model

    Improved annotation through genome-scale metabolic modeling of Aspergillus oryzae

    Language:MATLAB1100

  • SystemsBioinformatics/elementary-mode-based-FBA-rationale

    Code that uses Elementary Conversion Mode computation to obtain all relevant conversions for a constraint-based optimization problem, i.e., all possible optimal yields between the constrained nutrients and the objective function. As published in Metabolites https://doi.org/10.3390/metabo11050257

    Language:Python1300

  • maranasgroup/iRhto_memote

    Memote-created repository for Rhodosporidium toruloides model iRhto

    Language:HTML0603

  • maranasgroup/iSace_GSM

    Repository of a genome-scale metabolic model for Saccharomyces cerevisiae

    Language:Jupyter Notebook0401

  • pwendering/ArabidopsisCoreModel

    Platform for further development of the Arabidopsis core metabolic model

    Language:MATLAB0100

  • pwendering/AraTModel

    Integration of temperature-dependent constraints into a metabolic model of Arabidopsis thaliana

    Language:MATLAB0100