metagenome
There are 20 repositories under metagenome topic.
smaegol/PlasFlow
Software for prediction of plasmid sequences in metagenomic assemblies
Arkadiy-Garber/MagicLamp
A platform for targeted annotation of (meta)genomic and (meta)transcriptomic datasets using HMM sets.
franciscozorrilla/SymbNET
Teaching materials for SymbNET course: from MAGs to GEMs
DMnBI/ViBE
ViBE: a hierarchical BERT model to identify viruses using metagenome sequencing data
haradama/PlasmidPicker
Software to identify plasmid sequence data from metagenome using logistic regression and Minhash
haradama/pHash
Software to identify known plasmid sequence from metagenomic assembly using Minhash
JGI-Bioinformatics/axolotl
Axolotl is a Python library for scalable genome analysis, addressing the gap in tools for handling the rapid growth of genomic data with easy parallel processing.
TealFurnholm/Strain-Level_Metagenome_Analysis
Using a universal reference database, mixed assemblies, and cutting-edge software to give you the quantitative community phylogeny, a complete community functional analysis, and many strain(ish)-level high-quality bins.
raw-lab/metaome_stats
Statistical package for metaome denovo assembly results.
suzuki-shm/GRiD-in-cwl
Growth Rate Index Calculater wrapped by CWL
suzuki-shm/SPHERE
Synthetic PHasE Rate Estimator by single metagenome sequence
gundizalv/Arche
Arche: a functional-optimized annotator for microbial meta(genomes)
hildebra/clusterMAGs
clutering of MAGs (metagenome assembled genomes) into MGS (metagenomic species)
JAEYOONSUNG/FINDER
conserved sequenc-based degenerate primer design tool
mingleiR/trait-frame
Microbial trait-based framework
reslp/binner
Run multiple metagenome filtering programs using Docker containers
xvtyzn/MetaNyanko
Shotgun metagenomic analysis pipeline for SGE
applicativesystem/evolutionary-pangenome
a bash based evolautionary pangenome analysis
ayoraind/nxf_Tracs2
Nextflow pipeline incorporating the TRACS alignment step alone
jiarong/rplB-metaG-pipeline
rplB/rpsC targeted analyses with shotgun metagenomes