methylation-analysis
There are 28 repositories under methylation-analysis topic.
sirselim/illumina450k_filtering
A collection of resources to filter 'bad' probes from the Illumina 450k and EPIC methylation arrays
andreaskapou/scMET
Bayesian modelling of DNA methylation heterogeneity at single-cell resolution
shitohana/BSXplorer
Comprehensive tool for visualizing genome-wide cytosine data.
chiaraherzog/IlluminaMouseMethylationanno.12.v1.mm10
This package provides Illumina Mouse Methylation Array Annotation (12.v1, Genome Build mm10) compatible with minfi.
chiaraherzog/IlluminaMouseMethylationmanifest
This package provides Illumina Mouse Methylation Array Manifest (12.v1, Genome Build mm10) compatible with minfi.
stjude-biohackathon/MethylMiner
A methylation array analysis pipeline tailored for discovering rare methylation events with interactive data visualization
ErickNavarroD/RAMEN
Regional Association of Methylation variability with the Exposome and geNome (RAMEN) is an R package whose goal is to identify Variable Methylated Regions (VMRs) in microarray DNA methylation data. Additionally, using Genotype (G) and Environmental (E) data, it can identify which G, E, G+E or GxE model better explains this variability.
explcre/Adaptable-and-intrepretable-multi-task-learning-based-gene-level-methylation-estimation
adaptable and intrepretable,multi-task learning based gene-level methylation estimations
brj0/mepylome
Python toolkit for parsing, processing, and analysis of Illumina methylation array IDAT files
GDelevoye/SMSN
Re-implementation of J. Beaulaurier et al's SMSN strategy, using the default PacBio tools
shubhamchandak94/lossy_compression_evaluation
Impact of lossy compression of nanopore raw signal data on basecall and consensus accuracy
AnaValente/DNA-methylation-analysis
DNA methylation analysis pipeline for reduced representation bissulfite sequencing data
miamib34ch/HSE-Bioinformatics
Practical and home works in the discipline Bioinformatics.
bdecato/PMD_Paper_Scripts
A repository containing code, data, and resource links for the publication "Characterization of universal features of partially methylated domains across tissues and species"
espositomario/DNA_methylation_Infinium_HM450
This pipeline is designed for the analysis of DNA methylation data generated from the Illumina HumanMethylation450 BeadChip platform.
GianlucaMattei/methyl.O
Differentially methylated regions analysis
irenedonofrio/Infinium-meth-analysis
This repository contains the project of the DNA/RNA Dynamics course of the MSc Bioinformatics at the University of Bologna. The project is about the analysis of methylation data generated from Illumina HumanMethylation450K Beadchip.
kerseviciute/persimmon
Persimmon: DMR Finder
Maximvan/AHTAOmicsAnalysisPCOS
Identification for Key Pathways and Genes in Polycystic Ovary Syndrome (PCOS) using a multi-omics approach, as part of the Applied High Throughput Analysis course at Ghent University
pipaber/Epigenomics
This is a repository to show my experience analyzing different kinds of epigenomics data.
grev-uv/hpg-msuite
A powerful and friendly tool kit for methylation analysis of DNA
marcDabad/snakemake_nanometh
snakemake pipeline based on nanopolish
melikeguler99/HIBIT2023
The results of this study were presented as a poster at The International Symposium on Health Informatics and Bioinformatics (HIBIT Bioinformatics)
mpo05/MeD-seq-analysis
The following repository contains code to analyse MeD-seq data and detect statistically significant genomic bins.
tarsus-lam/tcga-multiomic
Analyzing TCGA cohorts and multiomic data in R
wegnerce/smk_emseq
Snakemake workflow for the processing of EMseq data
andrewdavidsmith/transferase
The transferase system for retrieving methylome data from methbase
dohlee/idat2beta
Small minfi wrapper to convert IDAT files to beta values.