microarray-data
There are 35 repositories under microarray-data topic.
bioinformatics-core-shared-training/microarray-analysis
Materials on the analysis of microarray expression data; focus on re-analysis of public data ( http://tinyurl.com/cruk-microarray)
tlatkowski/deep-learning-gene-expression
Deep learning methods for feature selection in gene expression autism data.
tarlaun/BioInf_Project
Bioinformatics course project - Fall 2020, analysis of genetic expression omnibus (GEO) data series of Acute Myeloid Leukemia
ahmedmoustafa/gene-expression-datasets
Collection of gene expression datasets
avogogias/MLCut
A visualization support tool for advanced hierarchical clustering analysis. MLCut allows cutting dendrograms at multiple heights/levels. In other words, it allows to set multiple local similarity thresholds in potentially large dendrograms. It uses two coordinated views, one for the dentrogram (radial layout), and another for the original multidimensional data (parallel coordinates). The purpose is to add flexibility and enforce transparency in the process of selecting branches that correspond to the different clusters, while enabling the discovery of visual patterns in the original data.
Tejindersingh1/Tumor-Prediction-with-ML
Tumor prediction from microarray data using 10 machine learning classifiers. Feature extraction from microarray data using various feature extraction algorithms.
Nico-Curti/DNetPRO
Discriminant Analysis with Network PROcessing
3inar/nowaclean
NOWAC data cleaning package
dhimmel/stargeo
Generating expression signatures for disease using STARGEO
h-saadatmand/High-dimensional-Feature-Selection-SIFE-MATLAB
An Efficeint and Fast Wrapper-based High-dimensional Feature Selection(SIFE) in MATLAB
kpatel427/GEOquery-scripts
Scripts using GEOquery package to fetch expression matrices and phenotypic data associated with GSE datasets
remytuyeras/HaploDynamics
A python library to develop genomic data simulators
srp33/ExpressionAble
Transform, query, and merge tabular files with the expressionable Python module. This tool is used primarily for gene-expression data.
CNuge/miscellaneous_scripts
Various python programs I use for the manipulation of SNP genotype datasets and other bioinformatics tasks. This repository features miscellaneous scripts to help work efficiently in common bioinformatics tasks I encounter. Use at own risk
Keniajin/protGear
protGear is a package for protein microarray data processing just before the main analysis.
PsorTheDoctor/microarray-data
Code for the future "Classification of microarray data" paper.
SamThilmany/microarray-analysis_treatment-kinetics
This R script is used to analyze microarray data acquired by an Agilent SureScan Microarray Scanner.
zakimjz/TriCluster
TriCluster and microCluster gene expression clustering algorithms
a-fsh-r/AML_Microarray_Analysis_An_Introduction_to_Bioinformatics_Project
My solutions for the project of "An Intro to Bioinformatics" - Sharif University of Technology (SUT) - Prof. Somayyeh Koohi and Prof. Ali Sharifi-Zarchi - Fall 2021(1400-1).
AcubeSAT/meta-analysis
Selection of genes to be cultured and studied on-board for the AcubeSAT nanosatellite project. Microarray data analysis in R. Meta-analysis in R. Literature review and more
Amandahsr/MicroarrayDifferentialAnalysis
Differential Gene Analysis of Telomere Microarray Data
Hazperera/Gene_Expression_Analysis
Differential expression analysis using R :dna:
jarnokoetsier/EXIS
EXIS is an interactive R shiny application for isoform-specific expression analysis.
KamilSuchanek95/micaff
MicAff is a genomic data analysis tool. Application made with Shiny. It is used to analyze the data from the microarray experiment. Running on a local server, it allows you to load CEL data, their initial processing and further analysis.
KevKap/Comp167TempoProject
This is a final group project for Computational Biology (CS167) implementing Tempo (http://bcb.cs.tufts.edu/tempo/) on a unique Parkinson's dataset. This project was contributed to equally by Kevin Kapner, Carlos Lopez-Rodriguez, and Qing Zhu.
NomadicPython/geo_sample_parser
Parser for .soft files from GEO datasets
SamThilmany/Microarray_Analysis_Pipeline-Cell_line_selection
A pipeline to analyze DNA microarrays by Agilent.
sjwilczynski/geneExpr
Code for my master thesis: "Microarray data analysis in prediction of breast cancer metastasis"
wuyueliuye/Disease-Identification
Use Deep Learning Methods to analyze gene based microarray data to make classifcations on diseases, especially cancers, where the model is going to identify cancer stages for different cancers.
3inar/pmadsim
pmadsim — Prospective Microarray Data Simulation. This is a fork of the madsim R package.
Glewando/Microarray_Analysis_Brain_6h_LPS
Analysis of microarray data from dHPC of rats treated with lps for 6h
swiri021/PCTA_web_application
PCTA web application by Django
vvrahul11/Breast-Cancer-grade-analysis
A structural equation modeling approach for the identification of gene expression adaptation in breast cancer patients at grade specific level
xlxs4/meta-analysis
Selection of genes to be cultured and studied on-board for the AcubeSAT nanosatellite project. Microarray data analysis in R. Meta-analysis in R. Literature review and more