microbial
There are 15 repositories under microbial topic.
jolespin/veba
A modular end-to-end suite for in silico recovery, clustering, and analysis of prokaryotic, microeukaryotic, and viral genomes from metagenomes
mblmicdiv/course2017
Genomics lessons for week 4 of the Microbial Diversity course at the Marine Biological Lab in Woods Hole, MA.
Arkadiy-Garber/MagicLamp
A platform for targeted annotation of (meta)genomic and (meta)transcriptomic datasets using HMM sets.
genomic-medicine-sweden/jasen
Bacterial typing pipeline for clinical NGS data. Written in NextFlow, Python & Bash.
Wishartlab-openscience/Biotransformer
A computational tool for the prediction and identification of metabolites.
dizak/mothulity
Easy-to-use tool facilitating work with Mothur.
sandain/ecosim
Ecotype Simulation: Models the sequence diversity within a bacterial clade.
Clinical-Genomics/microSALT
Microbial Sequence Analysis and Loci-based Typing pipeline for use on NGS WGS data.
muellsen/MNA
MATLAB scripts and functions for Microbial Network Analysis (MNA)
mblmicdiv/TrunkRiver_amplicon_analysis
Microbial community samples collected from the Trunk River in Woods Hole, MA 2014-2016.
IzabelShen/Abundance-occupancy
A repository for R code, data, figures, scripts from the manuscript "Abundance-occupancy relationships along taxonomic ranks reveal a consistency of niche differentiation in bacterioplankton with distinct lifestyles" (Submitted).
thecrobe/STURLAMicrobiome
This repo contains the code and files for the linked publication
yhjung1231/Laundry-QMRAproject-2022
Quantitative microbial risk assessment modeling
sourceduty/Microbiology_Simulator
🔬 Simulate microbiology scenarios and experiments.