microrna
There are 23 repositories under microrna topic.
rajewsky-lab/mirdeep2
Discovering known and novel miRNAs from small RNA sequencing data
MahShaaban/miRCancerdb
A database for microRNA-gene/protein expression correlation in cancer.
mariavica/mircomb
An R package to analyse miRNA-mRNA interactions from miRNA and mRNA expression data
bioinfoUQAM/mirLibSpark
microRNA validation using Spark framework
gbnegrini/mirdb-custom-target-search
This script implements a Selenium WebDriver to automate the access to miRDB - MicroRNA Target Prediction and Functional Study Database and search for microRNAs targets/seeds present in custom mRNA sequences.
ropensci/cRegulome
An R package to access, manage and visualize regulome (microRNA/transcription factors)-gene correlations in cancer
TreesLab/circRNA_ASD
Geneme-wide, integrative analysis of circular RNA dysregulation and the corresponding circular RNA-microRNA-mRNA regulatory axes in autism
Drmirdeep/mirdeep2_patch
Discovering known and novel miRNAs from small RNA sequencing data - updated scripts before release
aritronath/iMIRAGE
An R package to impute miRNA activity using protein-coding gene expression
BCMSLab/cregart
Code for the PeerJ paper (cRegulome: an R package for accessing microRNA and transcription factor-gene expression correlations in cancer)
Bio-designer/miRNA-analysis
miRNA-related resources
cyones/hextractor
Integrated tool for hairpins extraction from RNA Sequences
EnrightLab/bitetti_et_al_codebase
Supporting code for:"A conserved RNA regulates miRNA turnover and animal behavior through a near-perfect miRNA site"
mariavica/mirtranslate
Identify and translate miRNA names between different miRBase versions
pradyumnasagar/miRPV
miRPV is an automated tool that enables users to predict and validate microRNAs from genome/gene sequences. miRPV Features: Predict novel pre-miRNA from any given sequence Predict secondary structure stability Predict authentic pre-miRNA Predict novel mature miRNA Predict novel miRNA targets
theopavlove/paper-2023-conserved-microRNAs
"Conserved microRNAs and Flipons Shape Gene Expression during Development by Altering Promoter Conformations" International Journal of Molecular Sciences 24, no. 5: 4884
bio2bel/hmdd
A Bio2BEL package for converting the Human microRNA Disease Database (HMDD) to BEL
bio2bel/mirbase
A Bio2BEL package for miRBase (http://www.mirbase.org)
L0SG/miRNA_Project
miRNA Discovery Project : simple, easy-to-use, rule-based miRNA candidate discovery with multithread acceleration
MahShaaban/cRegulomedb
Build the database file for cRegulome package
MahShaaban/sqlome
Build SQLite tables of microRNAs and Transcription Factors-gene Correlations
seb-mueller/small-RNA_SWR1
Anlysis of small RNAs in Arabidopsis SWR1 mutant (published in Choi et al. 2016, Plant Physiology, http://www.plantphysiol.org/content/171/2/1128)