microrna

There are 23 repositories under microrna topic.

  • rajewsky-lab/mirdeep2

    Discovering known and novel miRNAs from small RNA sequencing data

    Language:Perl1321611950

  • MahShaaban/miRCancerdb

    A database for microRNA-gene/protein expression correlation in cancer.

    Language:R9205

  • ailab-seoultech/deepTarget

    Language:Python5101

  • mariavica/mircomb

    An R package to analyse miRNA-mRNA interactions from miRNA and mRNA expression data

    Language:R4139

  • bioinfoUQAM/mirLibSpark

    microRNA validation using Spark framework

    Language:Java3300

  • gbnegrini/mirdb-custom-target-search

    This script implements a Selenium WebDriver to automate the access to miRDB - MicroRNA Target Prediction and Functional Study Database and search for microRNAs targets/seeds present in custom mRNA sequences.

    Language:Python3104

  • ropensci/cRegulome

    An R package to access, manage and visualize regulome (microRNA/transcription factors)-gene correlations in cancer

    Language:R3644

  • TreesLab/circRNA_ASD

    Geneme-wide, integrative analysis of circular RNA dysregulation and the corresponding circular RNA-microRNA-mRNA regulatory axes in autism

    Language:R2331

  • Drmirdeep/mirdeep2_patch

    Discovering known and novel miRNAs from small RNA sequencing data - updated scripts before release

    Language:Perl1122

  • aritronath/iMIRAGE

    An R package to impute miRNA activity using protein-coding gene expression

    Language:R0200

  • BCMSLab/cregart

    Code for the PeerJ paper (cRegulome: an R package for accessing microRNA and transcription factor-gene expression correlations in cancer)

    Language:R0200

  • Bio-designer/miRNA-analysis

    miRNA-related resources

    Language:R01

  • cyones/hextractor

    Integrated tool for hairpins extraction from RNA Sequences

    Language:R00

  • EnrightLab/bitetti_et_al_codebase

    Supporting code for:"A conserved RNA regulates miRNA turnover and animal behavior through a near-perfect miRNA site"

    Language:HTML0200

  • mariavica/mirtranslate

    Identify and translate miRNA names between different miRBase versions

    Language:R0100

  • pradyumnasagar/miRPV

    miRPV is an automated tool that enables users to predict and validate microRNAs from genome/gene sequences. miRPV Features: Predict novel pre-miRNA from any given sequence Predict secondary structure stability Predict authentic pre-miRNA Predict novel mature miRNA Predict novel miRNA targets

    Language:Perl0200

  • theopavlove/paper-2023-conserved-microRNAs

    "Conserved microRNAs and Flipons Shape Gene Expression during Development by Altering Promoter Conformations" International Journal of Molecular Sciences 24, no. 5: 4884

    Language:Jupyter Notebook0100

  • bio2bel/hmdd

    A Bio2BEL package for converting the Human microRNA Disease Database (HMDD) to BEL

    Language:Jupyter Notebook31

  • bio2bel/mirbase

    A Bio2BEL package for miRBase (http://www.mirbase.org)

    Language:Python28

  • L0SG/miRNA_Project

    miRNA Discovery Project : simple, easy-to-use, rule-based miRNA candidate discovery with multithread acceleration

    Language:Python203

  • MahShaaban/cRegulomedb

    Build the database file for cRegulome package

    Language:R201

  • MahShaaban/sqlome

    Build SQLite tables of microRNAs and Transcription Factors-gene Correlations

    Language:R20

  • seb-mueller/small-RNA_SWR1

    Anlysis of small RNAs in Arabidopsis SWR1 mutant (published in Choi et al. 2016, Plant Physiology, http://www.plantphysiol.org/content/171/2/1128)

    20