microsatellite

There are 11 repositories under microsatellite topic.

  • Mercury-GS

    Open-Source-Satellite/Mercury-GS

    An Open Source Program that allows users to interact with a Spacecraft in a lab environment, pre-launch.

    Language:Python473138

  • lmdu/krait

    An ultrafast tool for genome-wide survey of microsatellites and primer design

    Language:HTML385329

  • lmdu/pytrf

    a python package for finding tandem repeats from genomic sequences

    Language:C9030

  • kohyamat/massgenotyping

    Python package for microsatellite genotyping from highly multiplexed amplicon sequencing data

    Language:Python7211

  • fcunial/Revant

    De novo repeat inference from long reads

    Language:Java0300

  • microsatellites/MSBench

    Build benchmark for microsatellite genotyping with HGSVC assembly contigs

    Language:Python0200

  • riosew/Mfind

    MFind Software

    Language:Java0100

  • pseudogene/qdd-docker

    User-friendly computer program for microsatellite selection and primer design revisited - Now in a Docker

    Language:Dockerfile20

  • schellt/msat-loci-identification

    De novo microsatellite loci identification pipeline as used in Schröder et al. (2021)

    Language:Perl20

  • sravel/MLG_assign

    Multi-Locus Genotypes (MLGs) are frequently used to carry out population genetics of clonal organisms. Tools to assign genotyped individuals to MLGs were integrated in some genetic software. However, these tools usually fail to appropriately deal with missing data.

    Language:Python10

  • zkamvar/repvar

    R package to find samples that represent all variables

    Language:R21