mitochondrial-variants

There are 9 repositories under mitochondrial-variants topic.

  • mitoNGS/MToolBox

    A bioinformatics pipeline to analyze mtDNA from NGS data

    Language:Python901010738

  • lmtani/wf-human-mito

    Workflow for human mitochondria analysis

    Language:Nextflow9130

  • ammodramus/mope

    Infer the dynamics of mitochondrial heteroplasmy during different life stages using population genetics and phylogenetics

    Language:Python5200

  • zouyinstein/hifisr

    HiFi-SR is a Python-based pipeline for the detection of plant mitochondrial structural rearrangements based on the mapping of PacBio high-fidelity (HiFi) reads or Circular Consensus Sequencing (ccs) data, to a reference genome (i.e., the hypothetical master cycle DNA).

    Language:Python5201

  • jvandinter/MitoCallPipeline

    A pipeline for mitochondrial mutation calling

    Language:HTML3100

  • TLenfers/multispecies_mitochondrial_variant_analysis

    This workflow performs a variant analysis on mitochondrial genomes using the bcftools variant caller. For human samples, the workflow also performs a variant analysis using mutserve.

    Language:Python2110
  • phdscripts

    asw0049/phdscripts

    This repository will house the scripts used to analyze and represent genomic and temperature data for my dissertation.

    Language:Shell1100

  • filcfig/PCP

    PrecisionCallerPipeline (PCP) automatically takes Precision ID mtDNA Whole Genome Panel (Thermo Fisher Scientific, USA) FASTQ files and outputs BAM files correctly aligned to the rCRS.

    Language:Shell0310

  • huruifeng/MitoX

    MitoX: exploring mitochondrial variants and gene expressions from single cell sequencing assays

    Language:Python20