mitogenome
There are 9 repositories under mitogenome topic.
Kinggerm/GetOrganelle
Organelle Genome Assembly Toolkit (Chloroplast/Mitocondrial/ITS)
RemiAllio/MitoFinder
MitoFinder: efficient automated large-scale extraction of mitogenomic data from high throughput sequencing data
cmayer/MitoGeneExtractor
The MitoGeneExtractor can be used to extract protein coding mitochondrial genes, such as COI and others from short and long read sequencing libraries.
RhettRautsaw/MitoSIS
MitoSIS (Mitochondrial Species Identification System) is a wrapper for mitochondrial genome assembly and identification of sample contamination or mislabeling.
charlesfoster/mitowrap
A snakemake pipeline wrapping MitoZ and getOrganelle for de novo mitogenome assembly using short reads and subsequent QC.
gavieira/mitofree
Automated mitochondrial genome assembly using SRA public data
avvypaks/GenGrab
Extraction of gene segments from genomes according to your gene boundary and genome dataset preparation
hempelc/mitogenome_assembly_evaluation
Comparing and evaluating mitogenome assemblers