motifs

There are 45 repositories under motifs topic.

  • shapelets/khiva

    An open-source library of algorithms to analyse time series in GPU and CPU.

    Language:C++229182730

  • aplbrain/dotmotif

    A performant, powerful query framework to search for network motifs

    Language:Python8111519

  • patrickzib/motiflets

    Motiflets

    Language:Jupyter Notebook46415

  • pinellolab/haystack_bio

    Haystack: Epigenetic Variability and Transcription Factor Motifs Analysis Pipeline

    Language:HTML464711

  • asntech/pyjaspar

    pyJASPAR: A Pythonic interface to JASPAR transcription factor motifs

    Language:Python23332

  • labomics/MetaLogo

    MetaLogo: a heterogeneity-aware sequence logo generator and aligner

    Language:Python20131

  • ensozos/Matrix-Profile

    A Java library for Matrix Profile

    Language:Java194157

  • geon0325/MoCHy

    Source code for VLDB 2020 paper "Hypergraph Motifs: Concepts, Algorithms, and Discoveries."

    Language:C++15205

  • zeno129/DYMOND

    DYnamic MOtif-NoDes (DYMOND) is a dynamic network generative model based on temporal motifs and node behavior.

    Language:Python14102

  • geon0325/THyMe

    Source code for KAIS (2023) paper "Temporal Hypergraph Motifs" and ICDM 2021 paper "THyMe+: Temporal Hypergraph Motifs and Fast Algorithms for Exact Counting."

    Language:C++11104

  • DongqiFu/L-MEGA

    Local Motif Clustering on Time-Evolving Graphs, KDD 2020

    Language:Python10102

  • sstsimulator/ember

    Ember Communication Patterns

    Language:C92018
  • Motif-detection-VB6

    Gagniuc/Motif-detection-VB6

    This application searches inside a text sequence for words that resemble those inside a list of similar words.

    Language:Visual Basic 6.08204

  • j-andrews7/pytfmpval

    Python bindings for the TFM-Pvalue program.

    Language:C++7324

  • kchu25/MOTIFs.jl

    DNA Motif discovery that includes the discovery of flexible (long or gapped) motifs.

    Language:Julia7110

  • gaetanoantonicchio/DataMining-2

    Repository for "Data Mining - Advanced Topics and Applications" projects exam.

    Language:Jupyter Notebook6100

  • pbloem/motive

    A proof-of-concept library for motif analysis using MDL techniques.

    Language:Java6130
  • Sequence-Logo-block-style

    Gagniuc/Sequence-Logo-block-style

    Sequence Logo - block style is an alternative that provides full control over how the graphics of a Sequence Logo should look like. All the inner workings of this open source application are written in native javascript. The application is independent of the internet once it is saved as a html file.

    Language:HTML510

  • sztal/pathcensus

    Python (3.8+) implementation of structural similarity and complementarity coefficients for undirected (un)weighted networks based on efficient counting of 2- and 3-paths (triples and quadruples) and 3- and 4-cycles (triangles and quadrangles).

    Language:Python5101
  • Sequence-Logo-relative-style-with-axes

    Gagniuc/Sequence-Logo-relative-style-with-axes

    Sequence Logo - relative style with axes is an alternative that provides full control over how the graphics of a Sequence Logo should look like. All the inner workings of this open source application are written in native javascript. The application is independent of the internet once it is saved as a html file.

    Language:HTML410

  • Milad137/Motif-Discovery

    modified exact discovery of time series motifs

    Language:Jupyter Notebook4101

  • autosome-ru/motif_benchmarks

    Benchmarks collection for GRECO TFBS Benchmarking Initiative

    Language:C3400
  • Sequence-Logo-block-style-with-axes

    Gagniuc/Sequence-Logo-block-style-with-axes

    Sequence Logo - block style with axes (native Java Script) is an alternative that provides full control over how the graphics of a Sequence Logo should look like. All the inner workings of this open source application are written in native javascript. The application is independent of the internet.

    Language:HTML210

  • kchu25/MotifPvalue.jl

    Threshold and p-value computations for Position Weight Matrices

    Language:Julia2140

  • tybens/SeqSpawner

    An object-oriented Python library for simulating biological sequences

    Language:Python2200

  • zeno129/DYANE

    DYnamic Attributed Node rolEs (DYANE) is an attributed dynamic-network generative model based on temporal motifs and attributed node behavior.

    Language:Python2100

  • aplbrain/motifstudio

    Language:Python1416

  • chaolinzhanglab/PlotPWM.jl

    Plot position weight matrices (PWM)

    Language:Julia1

  • duartebred/Algoritmos-Analise-Sequencias-Biologicas

    Repositório para apresentação de código desenvolvido pelo grupo 3 para a UC Algoritmos para Análise Sequências Biológicas do Mestrado em Bioinformática, ano lectivo 23-24.

    Language:Jupyter Notebook1000

  • duartebred/Algoritmos-Avancados-Bioinformatica

    Repositório para apresentação de código desenvolvido pelo grupo 2 para a UC Algoritmos Avançados para a Bioinformática do Mestrado em Bioinformática, ano lectivo 23-24.

    Language:Python1200

  • EGjika/Time-Course-Gene-Expression-Data-in-R

    The study presented here takes into consideration a dataset from this article regarding GARDIA Encystation. Article here: https://www.mdpi.com/2073-4425/12/12/1932

    Language:HTML110

  • duartebred/AASB-test

    Resolução proposta por Duarte Velho (PG53481) do teste realizado em Época Especial (23/24), da UC Algoritmos para Análise de Sequências Biológicas, providenciado pelo Professor Rui Mendes.

    Language:Python0100

  • ManuelaCarriero/motifs-search-and-discovery

    Motifs search and discovery in Pyrococcus Furiosus genome using MEME software (Physical Methods of Biology exam).

    0200

  • kchu25/SeqLogo.jl

    Plot position weight matrices (PWM)

    Language:Julia10

  • mahfuzmr/LoopDetector

    Loop detector on triplet formatted data

    Language:Python20

  • plurigrid/replay

    invert to subvert

    Language:Jupyter Notebook00