ms-spectrum

There are 8 repositories under ms-spectrum topic.

  • PNNL-Comp-Mass-Spec/Thermo-Raw-File-Reader

    .NET DLL wrapper for reading Thermo .Raw files. Uses ThermoFisher.CommonCore NuGet packages provided by Thermo Fisher Scientific

    Language:C#3816211

  • PNNL-Comp-Mass-Spec/DeconTools

    Used to deisotope mass spectra and to detect features from mass spectrometry data using observed isotopic signatures.

    Language:C#172174

  • PNNL-Comp-Mass-Spec/MASIC

    MASIC generates selected ion chromatograms (SICs) for all of the parent ions chosen for fragmentation in an LC-MS/MS analysis, characterizing the peak(s) in each SIC, computing peak statistics including elution time of the peak apex, peak area, and peak signal/noise. It can also extract reporter ion abundances (e.g. iTRAQ or TMT).

    Language:C#15654

  • PNNL-Comp-Mass-Spec/LCMS-Spectator

    LCMS raw data and MS-GF+ results viewer

    Language:C#82507

  • PNNL-Comp-Mass-Spec/MS-File-Info-Scanner

    Examines a series of MS data files (or data directories) and extracts the acquisition start and end times, number of spectra, and the total size of the data. In addition, it can create 2D-plot graphics of the m/z values vs. time for QA purposes.

    Language:C#8713

  • changlabtw/MS2CNN

    Language:Python4203

  • PNNL-Comp-Mass-Spec/Sipper

    Used to automatically detect and quantify partially labeled C13 peptides in a mass spectrometry dataset.

    Language:C#11001

  • PNNL-Comp-Mass-Spec/Thermo-Peak-Data-Exporter

    Extracts peak intensity data from each scan in a Thermo raw file, and writes that data to a tab-delimited text file.

    Language:C#150