multispecies-coalescent

There are 3 repositories under multispecies-coalescent topic.

  • arleyc/P2C2M2

    R package to test the multi-species coalescent model using trees estimated with starBEAST2 and to estimate false-positive error rates based on samples from the posterior predictive distributions

    Language:R0100

  • juliawiggeshoff/astral-species-tree

    This is a Snakemake workflow that calculates maximum-likelihood gene trees with IQ-TREE and 100 bootstrap replicates for each tree. Then, consensus trees are produced and combined to infer a species tree following the multispecies coalescent model with ASTRAL. Imported from my GitLab.

    Language:Python0100

  • arzwa/SmoothTree.jl

    Bayesian estimation of conditional clade distributions etc.

    Language:Julia10