mummer

There are 9 repositories under mummer topic.

  • tpoorten/dotPlotly

    Generate an interactive dot plot from mummer or minimap alignments

    Language:HTML19182354
  • MUMandCo

    SAMtoBAM/MUMandCo

    MUM&Co is a simple bash script that uses Whole Genome Alignment information provided by MUMmer (only v4) to detect Structural Variation

    Language:Shell6423114

  • ryought/mummer-idotplot

    Generate interactive dotplot from mummer4 output using plotly

    Language:Python25215

  • fjdf/slaMEM

    Finding Maximal Exact Matches (MEMs) using a Sampled LCP Array

    Language:C10336
  • AgrVATE

    VishnuRaghuram94/AgrVATE

    Rapid identification of Staphylococcus aureus agr locus type and agr operon variants.

    Language:HTML91162

  • lipingfangs/Panlineal

    Panlineal is capable of generating Vgs from multiple genome alignments in form of lineal pan-genome. Combining short reads data, it can also detect the the allelism conduced by PAVs combinations of vast samples in a species.

    Language:Python2100

  • eternal-bug/pymummer

    Python3 module for running MUMmer and reading the output

    Language:Python1000

  • ViktorKostin/delta-nucmer-converter-to-bam

    Converter Nucmer delta to bam

    Language:Python1113

  • Alvarortor/MNM

    List of programs that facilitate extraction and processing of MUMmer data

    Language:Python00