mutect2

There are 12 repositories under mutect2 topic.

TRON-Bioinformatics/tronflow-mutect2
Nextflow pipeline for Mutect2 somatic variant calling best practices
Language:Nextflow21 1 23
databricks/genomics-pipelines
secondary analysis pipelines parallelized with apache spark
Language:Scala15 6 012
renatopuga/somatico
GATK 4 Mutect2 Somático
Language:Shell7 2 029
nickveltmaat/SNVcaller
Pipeline to call SNV's with 4 tools (VarDict, LoFreq, Mutect2 & SiNVICT)
Language:Python3 3 01
SherineAwad/SomaticMutations
This a snakemake pipeline to detect Somatic mutations (GATK4 and Mutect2)
Language:Python3 2 12
asw0049/phdscripts
This repository will house the scripts used to analyze and represent genomic and temperature data for my dissertation.
Language:Shell1 1 00
gustaveroussy/wes-snp-bwa-mutect2-annovar
Reference pipeline for somatic SNP detection using BWA for mapping, Mutect2 for calling and Annovar for annotation
1 2 00
tdayris/fair_gatk_mutect2
Snakemake workflow used to call germline and/or somatic variants with GATK Mutect2
Language:Python1 2 00
Hanchaeeun/Linux_practice
유전체 데이터 돌연변이 분석
Language:Shell0 1 00
pedricolino/cnakepit
A Snakemake pipeline for copy number variant calling without normal tissue samples
Language:HTML1 0
RRafiee/MuTect1
Language:R1 0
stevekm/MuTect2_target_chunking
demo pipeline for testing different data chunking methods for MuTect2
Language:Nextflow2 0