network-inference
There are 52 repositories under network-inference topic.
saeyslab/nichenetr
NicheNet: predict active ligand-target links between interacting cells
pinellolab/dictys
Context specific and dynamic gene regulatory network reconstruction and analysis
shellrow/netdev
Cross-platform library for network interface and gateway. Written in Rust.
PLN-team/PLNmodels
A collection of Poisson lognormal models for multivariate count data analysis
ryanjgallagher/core_periphery_sbm
Bayesian network models for inferring core-periphery structure
fabian-sp/GGLasso
A Python package for General Graphical Lasso computation
fdtomasi/regain
REGAIN (Regularised Graphical Inference)
networkinference/ARNI
Algorithm for Revealing Network Interactions (ARNI) from nonlinear collective dynamics
lingfeiwang/findr
Fast Inference of Networks from Directed Regulations
hyu-ub/BayesNetBP
R package for inference in Bayesian networks.
praveenLT/java-selenium-intercept-network
A sample repo to help you intercept network with Selenium Java on LambdaTest cloud. Run your Java Selenium tests on LambdaTest platform.
mims-harvard/fusenet
Network inference by fusing data from diverse distributions
OceaneCsn/DIANE
Dashboard for the Inference and Analysis of Networks from Expression data
CABSEL/SINCERITIES
SINCERITIES is a tool for inferring gene regulatory networks from time-stamped cross-sectional single cell transcriptional expression profiles.
cellmapslab/kimono
KiMONo is a network inference tool for multi-omics datasets. The multi-omics network is calculated by sparse-group-LASSO regression and can incorporate prior biological information using protein-protein Interactions.
paulveillard/cybersecurity-networking
An ongoing curated collection of awesome software, libraries, frameworks, talks & videos, best practices, learning tutorials and important practical resources about networking in cybersecurity
GemsLab/hashing-based-network-discovery
Hashing-based network discovery from time series
pdesrosiers/GrangerCausality
MATLAB module for assessing the causal links between time series
callahantiff/owl-nets
Transforming OWL for statistical learning
dongeric/time-varying-graphical-lasso-impl
Implementation of time-varying graphical lasso from research paper (2019)
effrosyni-papanastasiou/constrained-em
A constrained expectation-maximization algorithm for feasible graph inference.
laser-institute/network-analysis
Social Network Analysis and STEM Education is designed to prepare researchers to apply network analysis in order to better understand and improve teaching and learning.
le-ander/MSc_Bioinfo-Network_Inference
Network inference for gene expression using gradient matching. Final research project as part of the MSc in Bioinformatics and Theorectical Systems Biology at Imperial College London 2016/2017.
newTypeGeek/Network-Reconstruction
Effect of hidden nodes on the reconstruction of bidirectional networks
Roy-lab/merlin-p
A prior-based integrative framework for functional transcriptional regulatory network inference (Fotuhi Siahpirani & Roy, Nucleic Acids Research 2017)
biolab/red
Inference of Epistatic Gene Networks
cgao-comp/PBI
The code of the paper "Pairwise-interactions-based Bayesian Inference of Network Structure from Cascades"
dimitra-maoutsa/Connectivity_from_event_timing_patterns
Model-free method for inferring synaptic interactions from spike train recordings.
GrossTor/IdentiFlow
Identifiability and experimental design in perturbation studies
networkinference/ESL
Network inference via Event Space Linearization (ESL)
paubellot/netbenchmark
This package implements a benchmarking of several gene network inference algorithms from gene expression data
plliao/FASTEN
FASTEN: the software to influence multiple diffusion networks using the first-hand sharing pattern.
Roy-lab/merlin
Regulatory network inference with module prior
Roy-lab/mrtle
Multi-species regulatory network learning (Koch et al, Cell Systems 2017)
Fjeanneret/multiSight
:bar_chart: :clipboard: Bioconductor R package with Graphical Interface to handle multi-omic data by Classification, Enrichment and Network inference.