network-inference

JuliaDynamics/Associations.jl

Algorithms for quantifying associations, independence testing and causal inference from data.

pinellolab/dictys

Context specific and dynamic gene regulatory network reconstruction and analysis

shellrow/netdev

Cross-platform library for network interface and gateway. Written in Rust.

PLN-team/PLNmodels

A collection of Poisson lognormal models for multivariate count data analysis

fabian-sp/GGLasso

A Python package for General Graphical Lasso computation

ryanjgallagher/core_periphery_sbm

Bayesian network models for inferring core-periphery structure

fdtomasi/regain

REGAIN (Regularised Graphical Inference)

networkinference/ARNI

Algorithm for Revealing Network Interactions (ARNI) from nonlinear collective dynamics

lingfeiwang/findr

Fast Inference of Networks from Directed Regulations

hyu-ub/BayesNetBP

R package for inference in Bayesian networks.

paulveillard/cybersecurity-networking

An ongoing curated collection of awesome software, libraries, frameworks, talks & videos, best practices, learning tutorials and important practical resources about networking in cybersecurity

praveenLT/java-selenium-intercept-network

A sample repo to help you intercept network with Selenium Java on LambdaTest cloud. Run your Java Selenium tests on LambdaTest platform.

OceaneCsn/DIANE

Dashboard for the Inference and Analysis of Networks from Expression data

laser-institute/network-analysis

Social Network Analysis and STEM Education is designed to prepare researchers to apply network analysis in order to better understand and improve teaching and learning.

mims-harvard/fusenet

Network inference by fusing data from diverse distributions

CABSEL/SINCERITIES

SINCERITIES is a tool for inferring gene regulatory networks from time-stamped cross-sectional single cell transcriptional expression profiles.

cellmapslab/kimono

KiMONo is a network inference tool for multi-omics datasets. The multi-omics network is calculated by sparse-group-LASSO regression and can incorporate prior biological information using protein-protein Interactions.

GemsLab/hashing-based-network-discovery

Hashing-based network discovery from time series

callahantiff/owl-nets

Transforming OWL for statistical learning

pdesrosiers/GrangerCausality

MATLAB module for assessing the causal links between time series

Roy-lab/merlin-p

A prior-based integrative framework for functional transcriptional regulatory network inference (Fotuhi Siahpirani & Roy, Nucleic Acids Research 2017)

dongeric/time-varying-graphical-lasso-impl

Implementation of time-varying graphical lasso from research paper (2019)

effrosyni-papanastasiou/constrained-em

A constrained expectation-maximization algorithm for feasible graph inference.

le-ander/MSc_Bioinfo-Network_Inference

Network inference for gene expression using gradient matching. Final research project as part of the MSc in Bioinformatics and Theorectical Systems Biology at Imperial College London 2016/2017.

newTypeGeek/Network-Reconstruction

Effect of hidden nodes on the reconstruction of bidirectional networks

biolab/red

Inference of Epistatic Gene Networks

GrossTor/IdentiFlow

Identifiability and experimental design in perturbation studies

paubellot/netbenchmark

This package implements a benchmarking of several gene network inference algorithms from gene expression data

tallulandrews/scTarNet

cgao-comp/PBI

The code of the paper "Pairwise-interactions-based Bayesian Inference of Network Structure from Cascades"

dimitra-maoutsa/Connectivity_from_event_timing_patterns

Model-free method for inferring synaptic interactions from spike train recordings.

networkinference/ESL

Network inference via Event Space Linearization (ESL)

plliao/FASTEN

FASTEN: the software to influence multiple diffusion networks using the first-hand sharing pattern.

Roy-lab/merlin

Regulatory network inference with module prior

Roy-lab/mrtle

Multi-species regulatory network learning (Koch et al, Cell Systems 2017)