neuron-segmentation

There are 8 repositories under neuron-segmentation topic.

ilastik/nature_methods_multicut_pipeline
Language:Python19 16 52
celisun/Deep_learning_automated__neuron_segmentation
Electron Microscopy Images, Neuron Segmentation Task. https://cremi.org
Language:Python17 1 02
markschoene/MeLeCoLe
Metric learning and contrastive learning for neuron segmentation
Language:Python8 1 00
AllenNeuralDynamics/segmentation-skeleton-metrics
A Python package for evaluating a predicted segmentation of neural arbors by using skeleton-based metrics. This tool detects topological mistakes (i.e. splits and merges) in a predicted segmentation by comparing it to a set of ground truth skeletons.
Language:Python6 5 90
dsp-uga/NeuronSegmentation-TeamWright
Neuron Segmentaion, Python, Keras, Neural-networks, NMF, Binary Classification, Blob detection
Language:Python1 3 62
Jesse-McDonald/CASTER
Computer Assisted Segmentation Tool Environment Revisit
Language:Processing1 3 111
Leandroscholz/swc_metrics
set of filament tracing metric computation utilities (for .swc files)
Language:Python1 1 00
seung-lab/emirt
EM Image Reconstruction Tools using Python
Language:Python39 1