neuroscience-methods

There are 103 repositories under neuroscience-methods topic.

  • open-computational-neuroscience-resources

    A publicly-editable collection of open computational neuroscience resources

    573

  • neurolib

    Easy whole-brain modeling for computational neuroscientists 🧠💻👩🏿‍🔬

    Language:Python415

  • rastermap

    a visualization method for neural data

    Language:Python199
  • EEGEdu

    EEGEdu

    Interactive Brain Playground - Browser based tutorials on EEG with webbluetooth and muse

    Language:JavaScript177

  • Case-Studies-Python

    An introduction to the practicing neuroscientist to data analysis in Python

    Language:Jupyter Notebook152

  • JATOS

    Just Another Tool for Online Studies

    Language:JavaScript87

  • eyestalker

    Robust video-based eye tracking using recursive estimation of pupil characteristics

    Language:C++67

  • behavenet

    Toolbox for analyzing behavioral videos and neural activity

    Language:Python57

  • DeepLabStream

    Closed-loop behavioral experiment toolkit using pose estimation of body parts.

    Language:Python52

  • NeuroAI

    NeuroAI-UW seminar, a regular weekly seminar for the UW community, organized by NeuroAI Shlizerman Lab.

    51

  • ERDiff

    [NeurIPS'23 Spotlight] Official Repo for "Extraction and recovery of spatio-temporal structure in latent dynamics alignment with diffusion models"

    Language:Python45

  • imaging_tools

    A table containing imaging analysis tools for biology, with a focus on calcium imaging.

    45

  • naplib-python

    Tools and functions for neural data processing and analysis in python

    Language:Python24

  • CuBIDS

    Curation of BIDS (CuBIDS): A sanity-preserving software package for processing BIDS datasets.

    Language:Python21

  • pygpso

    Gaussian-Processes Surrogate Optimisation in python

    Language:Python19

  • NeuroPattToolbox

    MATLAB toolbox to automatically detect, analyze and visualize spatiotemporal patterns in neural population activity, developed by Dr. Pulin Gong's group at University of Sydney

    Language:MATLAB16
  • electroCUDA

    electroCUDA

    Robust electrophysiology tools with GPU acceleration

    Language:Cuda15

  • SpikeShip

    SpikeShip: A method for fast, unsupervised discovery of high-dimensional neural spiking patterns.

    Language:Jupyter Notebook14

  • RLWorms

    Setting up C elegans as an RL environment.

    Language:Jupyter Notebook14

  • SPM_fMRI_Example_Pipeline

    Example pipeline for preprocessing, reading in behavioural files, first level and second level analysis

    Language:MATLAB14
  • BRAPH

    BRAPH

    Brain Analysis using Graph Theory

    Language:MATLAB12

  • HNCcorr

    HNCcorr algorithm for neuron identification in calcium imaging datasets.

    Language:Python12

  • BPt

    The Brain Predictability toolbox (BPt), is a python based Machine Learning library designed primarily for tabular and neuroimaging specific neuroimaging data but can easily be generalized further.

    Language:Python11

  • CoTETE.jl

    Continuous-Time Event-based Transfer Entropy

    Language:Julia10

  • bossdevice-api-matlab

    sync2brain's bossdevice RESEARCH Application Programmable Interface (API) for MATLAB

    Language:MATLAB9
  • EvolutionOfCorticalShape

    EvolutionOfCorticalShape

    Data and tools from the publication "Evolution of Cortical Geometry and its Link to Function, Behaviour and Ecology" by Schwartz et al. for mapping values defined on cortical surfaces between species based on their phylogenetic relationship

    Language:Shell8

  • rsp-vision

    Analysis and visualization of calcium imaging data from retrosplenial cortex

    Language:Python8

  • Part-Whole

    Swap facial landmarks(or whole facial area) for the part-whole task with OpenCV + dlib and MediaPipe.

    Language:Python8

  • Dynamics-of-Computational-Neuron-Models

    Neural simulations using Brian2 Python Package

    Language:Jupyter Notebook8

  • OEvent

    Neural oscillation event detection and analysis

    Language:Python8

  • BluegrassWorkingMemory

    A setup to evaluate working memory using EEG signals

    Language:Python8

  • Charlie2

    Open-source neurocognitive test battery written in Python

    Language:Python8

  • BrainPalimpsest

    Matlab toolbox to deconvolve BOLD-fMRI data. It produces the underlying spatiotemporal neural and hemodynamic activity

    Language:MATLAB8

  • mesmerize-napari

    Mesmerize plugin for the napari viewer

    Language:Python6

  • latency

    A function to extract various kinds of latency estimates from MEG/EEG data

    Language:MATLAB6

  • detoks

    Detection of K-complexes and Sleep Spindles (DETOKS) using Sparse Optimization for sleep EEG

    Language:MATLAB6