nextclade

There are 4 repositories under nextclade topic.

neherlab/nextclade_data_workflows
Language:Python4 4 281
AdrianLimaG/Influenza_Pipeline
KDHE Influenza A pipeline, built to take MinIon fastq files and produce clade analysis
Language:Perl2 1 02
cmkobel/pipe19
This is the pipeline that handles SARS-CoV-2 samples from the health sector in Region Midtjylland (Illumina PE)
Language:R2 3 61
marithetland/susCovONT
Pipeline to generate consensus.fasta files and identify pangolin lineage and nextstrain clade of Sars-CoV-2 genomes from ONT sequencing
Language:Python1 2 12