ngstools

There are 21 repositories under ngstools topic.

  • fritzsedlazeck/SVCollector

    Method to optimally select samples for validation and resequencing

    Language:C++26425

  • khuang28jhu/bs3

    BS-Seeker3: An Ultra-fast, Versatile Pipeline for Mapping Bisulfite-treated Reads.

    Language:Python2633613

  • SchulzLab/ORNA

    Fast in-silico normalization algorithm for NGS data

    Language:C++224144

  • apietrelli/myVCF

    myVCF: a web-based platform for target and exome mutations data management

    Language:Python200113

  • ALAPY/alapy_arc

    ALAPY COMPRESSOR: FASTQ lossless compressor

    8511

  • TimoLassmann/tagdust

    A tool to extract mappable reads from various library preparation protocols.

    Language:C7240

  • rptashkin/facets2n

    Algorithm to implement Fraction and Allelic Copy number Estimate from Tumor/normal Sequencing using unmatched normal sample(s) for log ratio calculations

    Language:R6374

  • cchrysostomou/seqtables

    Tools for analyzing NGS sequence data and aligned protein sequences

    Language:Python5332

  • akiomiyao/ped

    Polymorphic Edge Detection - An efficient polymorphism detector for NGS data

    Language:Perl4302

  • kpatel427/bash

    useful bash one-liners and scripts

    Language:Shell3302

  • simras/CLAP

    CLAP - A pipeline used to process CLIP-seq (specifically PAR-CLIP, HITS-CLIP and iCLIP) data.

    Language:Perl2220

  • MBeyens/pyAmpli

    pyAmpli: an amplicon-based variant filter pipeline for targeted enriched resequencing data

    Language:Python1300

  • smangul1/ec

    This project includes simulated and 'golden standard' datasets, software and scripts that we used to benchmark error correction tools

    Language:Python19223

  • tiagoantonio/woland

    WOLAND is a multiplatform tool to analyze point mutation patterns using resequencing data from any organism or cell. It is implemented as a Perl and R tool using as inputs filtered unannotated or annotated SNV lists, combined with its correspondent genome sequences.

    Language:Perl1203

  • whl-usc/cris_tools

    A collection of various tools useful for the deep analysis of data generated via the CRSSANT/rna2d3d pipeline.

    Language:Python1100

  • FSUgenomics/SRSFseq

    SRSF shape analysis framework for sequencing data

    Language:R0412

  • rodriguez-salarichs/vecscreen_extract

    Program extracts a valuable information from an output vecscreen file

    Language:Roff0100

  • Volcanix280/Mouse_Study_Pipeline

    (Archived) This page is a record of my first formal NGS Project for Dr. Matesic of University of South Carolina (USC).

    0100

  • chgibb/unMappedCIGARFragments

    Extract unmapped read fragments from a sequence alignment map by evaluating it's concise idiosyncratic gapped alignment reports (CIGARs)

    Language:TypeScript30

  • ddiez/ngstools

    Miscellaneous tools for the analysis of NGS data

    Language:R20

  • osvaldogc/nextpresso1.9

    Next generation sequencing expression analysis pipeline

    Language:Perl20