nucleosome-positioning
There are 15 repositories under nucleosome-positioning topic.
tobiasrausch/ATACseq
Analysis Workflow for Assay for Transposase-Accessible Chromatin using sequencing (ATAC-Seq)
nf-core/mnaseseq
MNase-seq analysis pipeline using BWA and DANPOS2.
ArnaudDroitLab/RJMCMC
RJMCMC: Genome-Wide Nucleosome Positioning in R
jipingw/DNAcycP
DNAcycP: a deep learning tool for DNA cyclizablity prediction
adeschen/consensusSeekeR
This R package compares genomic positions and genomic ranges from multiple experiments to extract common regions. The size of the analyzed region is adjustable as well as the number of experiences in which a feature must be present in a potential region to tag this region as a consensus region. Tested on ChIP-Seq peaks and nucleosome positions.
crickbabs/BABS-MNASeqPE
This pipeline has been superceeded. Please use >>>
FSUgenomics/SRSFN
SRSF framework for nucleosome positioning analysis
gportella/nucleosome_positioning_proxies
Tools to assess the intrinsic nucleosome positioning from sequence information alone
hungyok/nuctf_equi_bai
Statistical equilibrium models for computing occupancy of nucleosome and transcription-factors.
jeffmak/crispr-cas9-epigenetics
Code for "Comprehensive computational analysis of epigenetic descriptors affecting CRISPR-Cas9 off-target activity"
ArnaudDroitLab/RJMCMCNucleosomes
Bioconductor Package - Genome-Wide Nucleosome Positioning in R with an optimized section in C++
drpatelh/nf-core-mnaseseq
See the main fork of this repository here >>>
Swart-lab/mnutils
MNase-seq utilities
WENDYYCM/SAMOSA_ZMW_Selector_Script
Enhanced zmw_selector.py + New run_zmw_selector.sh