nucleotide

There are 11 repositories under nucleotide topic.

instadeepai/nucleotide-transformer
🧬 Nucleotide Transformer: Building and Evaluating Robust Foundation Models for Human Genomics
Language:Python532 21 6060
ncbi/icn3d
web-based protein structure viewer and analysis tool interactively or in batch mode
Language:JavaScript154 19 10143
chasewnelson/SNPGenie
Program for estimating πN/πS, dN/dS, and other diversity measures from next-generation sequencing data
Language:Perl110 10 7637
drostlab/metablastr
Seamless Integration of BLAST Sequence Searches in R
Language:R31 5 128
Eslam-Samir-Ragab/Sequence-database-curator
This program dereplicates and/or filter nucleotide and/or protein database from a list of names or sequences (by exact match).
Language:Python15 5 34
quantori/FastqHeat
Python wrapper created to help download metagenomic data from SRA or ENA databases
Language:Python2 3 90
0xnu/nwunsch
Needleman–Wunsch algorithm implementation in Go.
Language:Go1 1 00
chasewnelson/Soni-response
Scripts, analysis code, input data, and intermediate files for response to Soni et al.
Language:R1 1 00
0xnu/nwunsch_lua
Needleman–Wunsch algorithm implementation in Lua.
Language:Lua0 1 00
M-Kasaei/Sequelyzer
Sequelyzer is a tool designed to help you calculate the proportion of each nucleobase (A, T, C, and G) and CG in a DNA/RNA sequence, and find its reverse complement
Language:Python0 1 00
Shubhashisdas/nucleotide_content
DNA nucleotide count
Language:Shell0 1 00