nucleotides
There are 47 repositories under nucleotides topic.
BrayanIribe/dna-rnam-prettifier
Simple web-based DNA/RNAm prettifier. Includes Ribosomal translation too.
cyverseuk/blast
blast docker image and cyverse integration
oliszymanski/Count-DNA-Nucleotides
Used for counting the number of all four nucleotides and finding the percentage number of each of them
roberts-farm-of-ideas/13
Determine the thermodynamic properties for nucleotide conversions
Xendrra/ABIN-2019
translation of nucleotide sequence to protein sequence in matlab
bhofmei/jbplugin-nucdens
No longer actively developed...See README
jflopezfernandez/GeneParser
C++ nucleotide parser
OrangePomeranian/Programy_Komputerowe
Translation of the FASTA file with genetic code into aminoacid code.
PetePrattis/Hidden-Markov-Model-for-sequence-state-decoding
A Python script that implements an HMM with two states a and b. When the model is in state a it is more likely to emit purines A and G. When it is in state b it is more likely to emit pyramidines C and T. Decode the most likely sequence of states for the GGCT sequence using logarithmic scoring instead of normal probability scoring.
PetePrattis/sequence-global-alignment-with-unknown-nucleotides
A Python script that for a parameter k, calculates the universal alignment of 2 sequences, with limitation that the alignment contains at most k unknown nucleotides. Nucleotide sequences are sometimes written in a 5-character alphabet, A, T, G, C, and N where N stands for an undefined nucleotide.
spencer-hs/Sequence-Parsing-Counting-Python
Small programs to parse and analyze sequence files. Misc programs