occupancy-modeling

RansML/simulator_lidar

Simulate dynamic environments and LiDAR observations

jniedballa/camtrapR

R package for camera trap data management

gira3d/gira3d-occupancy-modeling

Local occupancy modeling from Gaussian Mixture Models.

oliviergimenez/occupancy_TMB

Illustrate how to fit dynamic occupancy model in TMB. Benchmarking vs. ADMB, Unmarked and JAGS.

oliviergimenez/popdyn-workshop

Website of workshop Quantitative Methods for Population Dynamics in R

oliviergimenez/poaching_occupancy

Inferring poaching with multispecies dynamic occupancy models and hidden Markov models

oliviergimenez/2speciesoccupancy

Simulate data and fit 2-species occupancy model à la Rota et al. (2016) w/ Unmarked

oliviergimenez/computo-deeplearning-occupany-lynx

oliviergimenez/ursus_Pyrenees_occupancy

Contains data and R code for paper on occupancy analyses of Brown bear habitat use in the Pyrenees

oliviergimenez/spatial-stream-network-occupancy-model

Data, code and manuscript for 'Spatial occupancy models for data collected on stream networks'

oliviergimenez/bias_occupancy

Calculate bias in occupancy estimate for static model

NarmadhaMM/Bayesian-ML-for-occupancy-data

Includes the R code and the supporting materials for our paper "Using machine learning to identify nontraditional spatial dependence in occupancy data"

oliviergimenez/monkseal-occupancy

Data and code for a paper on Med monk seal distribution in Greece

oliviergimenez/multistate_occupancy

Code to fit a multistate occupancy model with uncertainty in Jags

sfu-mial/TreeDiffusion

Official Code for "Representing Anatomical Trees by Denoising Diffusion of Implicit Neural Fields"

TobiasRoth/detectionfilter

This repository contains all the materials needed to reproduce Roth et. al (2017): Functional ecology and imperfect detection of species. Methods in Ecology and Evolution.

zoj613/OccuSpytial

A package for fast bayesian analysis of single season spatial occupancy models.

Mauriciodiazz/A_blancae_occ_code

This repository has the one species one season occupancy model of Atlapetes blancae, developed under R code. This occupancy model has been make using the "unmarked" package. Here we evaluated vegetation, enviromental and terrain covariates. Please let me know if you find any mistake.

oliviergimenez/occupancy_in_ADMB

Illustrate how to fit dynamic occupancy model in ADMB. Benchmarking with Unmarked and JAGS.

risdell/SingleSeasonOccupancyModelBliss

Bayesian Single-season Occupancy Model with JAGS using BLISS

biggproject/A4-Occupancy-pattern-detection

Occupancy pattern detection for comfort and energy optimization

dilsaddt/NorthAnatolia_2022_singlesp_seasonal_habitat_use

Single-species, dynamic occupancy models to investigate seasonal habitat-use patterns

dilsaddt/NorthAnatolia_2023_multispecies_seasonal_cooccurrence

Multispecies occupancy models to investigate seasonal co-occurrence of predator-prey pairs and changes withing these co-occurrences.

FelixNoessler/QCB_Black_Kite

Occupancy model of the Black Kite in Spain under current and future predicted climate scenarios

dlizcano/IntroOccuPresent

Presentación de Curso Ocupación a WCS Quito

dlizcano/occu_ndesantander

Modelos de ocupación para mamíferos en norte de Santander

LEEClab/ms_landscape_ecology_invase_primate_MoraisJr_etal

Supplementary material of the article "Disentangling the effects of anthropogenic and habitat factors on the distribution of an invasive primate" by Morais-Jr et al.

oliviergimenez/occ_balkanlynx

analyses for Balkan lynx paper

oliviergimenez/prezDLoccupancy

Slides of a talk on deep learning, false negatives/positives and predator-prey interactions with R.

TobiasRoth/corncrake

Occupancy model that allows for staggered arrival and departure times to analyse corncrake calling sites.