omero

There are 159 repositories under omero topic.

  • omero_batch-plugin

    Language:Java4

  • omero-guide-cellprofiler

    Language:Jupyter Notebook4

  • omero-k8s-templates

    Language:Dockerfile1

  • ezomero_demo_ome2021

    Language:Jupyter Notebook1

  • Bio

    A .NET library & program for annotating, & editing various microscopy imaging formats using Bioformats supported images. including whole slide, pyramidal & series.

    Language:C#4

  • jax-omero-transfer

    Transfer OMERO datsets from the Research server to the Public server.

    Language:Python4

  • omero_3Dscript

    OMERO.web app to animate multi-dimensional microscopy using 3Dscript, directly from within the OMERO environment.

    Language:JavaScript4

  • MicroMetaApp-Omero

    This is a limited-functionality, beta - implementation of the integration of Micro-Meta App in the OMERO.web client

    Language:JavaScript4

  • omero-downloader

    An OMERO client for downloading data in bulk from the server.

    Language:Java4

  • W-IDM_OmeroImporter

    This repository contains software that was developed for the management of bioimage data generated at UMass Chan Medical School and as part of the Canada Bioimaging RDM initiative.

    Language:Java4

  • prod-playbooks

    Playbooks used by the OME team for deploying production services including OMERO

    Language:Jinja4

  • ansible-role-omero-server

    Installs and configures OMERO.server

    Language:Python4

  • omero-install

    OMERO installation scripts

    Language:Shell4

  • webtagging

    Extensions to OMERO.web to enhance tagging and searching

    Language:JavaScript4

  • W-IDM_OmeroImporterPy

    This repository contains software that was developed to add metadata annotations to bioimage data before importing it into OMERO

    Language:Python3

  • 2024-jn-omero-pipeline

    Material and Instruction for the course "Bioimage data management and analysis with OMERO"

    Language:Jupyter Notebook3

  • omero-scripts

    OMERO.web script to convert grey scale label images into OMERO Rois

    Language:Python3

  • BeadNet-v2

    Deep learning-based particle detection tool for microscopy images

    Language:Python3

  • hrm-omero

    The HRM-OMERO connector

    Language:Python3

  • omero-test-infra

    Test infrastructure for decoupled repositories

    Language:Shell3

  • omero-marshal

    OMERO marshalling infrastructure

    Language:Python3

  • omero-webtest

    An OMERO.web app for prototypes and examples

    Language:HTML3

  • omero-tabbles

    OMERO.web script to create Annotations in OMERO based on Tags from Tabbles

    Language:Python2

  • omero-training-materials

    Repo with materials for OMERO training and scripts to set up a training server.

    Language:Python2

  • docker-from-omero-poc

    proof-of-concept running docker container from omero web

    Language:Python2

  • napari_omero_rois

    Saving napari ROIs into OMERO

    Language:Python2

  • omero-rois

    OMERO python ROI utils

    Language:Python2

  • ecdp2019-publication

    Supplementary information associated with Besson et al. (2019) ECDP 2019

    Language:Python2

  • W-IDM_OmeroDataWriter

    This repository contains sofware that was created for the automatic image data management of image data generated at UMass Chan Medical School and as part of the Canada Bioimaging RDM initiative.

    Language:Java2

  • omero-prometheus-tools

    Utilities for monitoring OMERO with Prometheus

    Language:Python2

  • omero-cli-render

    OMERO command-line tool for rendering

    Language:Python2

  • docker-example-omero-grid

    Multi-container OMERO

    Language:Shell2

  • omero-cli-duplicate

    OMERO command-line tool for duplicating database objects

    Language:Python2

  • webemdb

    OMERO.web EMDB

    Language:Python2

  • W-IDM_OmeroImporterExcelHelperPy

    This repository contains Python software that was created to explore file system directories and automatically collect the names of image data files to be annotated with experimental and sample preparation metadata and imported into OMERO.

    Language:Python1

  • jax-omerometrics

    Repo for generating OMERO reports/dashboards

    Language:Python1