omex
There are 21 repositories under omex topic.
biosimulators/Biosimulators
Registry of containerized biosimulation tools that support a standard command-line interface
biosimulators/Biosimulators_utils
Utilities for building standardized command-line interfaces for biosimulation software packages
biosimulators/Biosimulators_AMICI
AMICI biochemical network simulation program via BioSimulators-compliant command-line interface and Docker container
biosimulators/Biosimulators_pyNeuroML
pyNeuroML simulation program via BioSimulators-compliant command-line interface and Docker container
biosimulators/Biosimulators_PySCeS
PySCeS biochemical network simulation program via BioSimulators-compliant command-line interface and Docker container
biosimulators/Biosimulators_tutorials
Tutorials for BioSimulators
maurosilber/biomodels
Python library to download and cache models from BioModels
biosimulations/biosimulations-bigg
Command-line program and scheduled GitHub action for publishing the BiGG model repository to BioSimulations
biosimulations/biosimulations-rulehub
Repository of rule-based models implemented with the BioNetGen model language (BNGL) and command-line program for publishing RuleHub to BioSimulations
biosimulators/Biosimulators_MASSpy
MASSpy mathematical simulation program via BioSimulators-compliant command-line interface and Docker container
biosimulators/Biosimulators_OpenCOR
OpenCOR simulation program via BioSimulators-compliant command-line interface and Docker container
biosimulations/biosimulations-modeldb
Command-line program and scheduled GitHub action for publishing the ModelDB model repository to BioSimulations
biosimulators/biosimulators.github.io
Summary of the technical documentation for BioSimulators
biosimulations/biosimulations-physiome
Command-line application for publishing the Physiome model repository of physiological models to the BioSimulations repository for simulation projects
biosimulators/Biosimulators_BoolNet
BoolNet biochemical network simulation program via BioSimulators-compliant command-line interface and Docker container
biosimulators/Biosimulators_CBMPy
CBMPy biochemical network simulation program via BioSimulators-compliant command-line interface and Docker container
biosimulators/Biosimulators_GINsim
GINsim biochemical network simulation program via BioSimulators-compliant command-line interface and Docker container
biosimulators/Biosimulators_iBioSim
CBMPy biochemical network simulation program via BioSimulators-compliant command-line interface and Docker container
biosimulators/Biosimulators_LibSBMLSim
LibSBMLSim mathematical simulation program via BioSimulators-compliant command-line interface and Docker container
biosimulators/Biosimulators_RBApy
RBApy biochemical network simulation program via BioSimulators-compliant command-line interface and Docker container
biosimulators/Biosimulators_XPP
XPP mathematical simulation program via BioSimulators-compliant command-line interface and Docker container