omop
There are 63 repositories under omop topic.
MIT-LCP/mimic-omop
Mapping the MIMIC-III database to the OMOP schema
callahantiff/OMOP2OBO
OMOP2OBO: A Python Library for mapping OMOP standardized clinical terminologies to Open Biomedical Ontologies
aphp/Cohort360-FrontEnd
A web application to find patients, build cohorts and visualize health records
aphp/eds-scikit
eds-scikit is a Python library providing tools to process and analyse OMOP data
USM-CHU-FGuyon/BlendedICU
OMOP standardization pipeline for ICU databases
ieeta-pt/DrAC
Extracting Patients' information from clinical notes and export them to an OMOP CDM database.
PEDSnet/Data-Quality-Analysis
The PEDSnet Data Quality Assessment Toolkit (OMOP CDM)
BiomedSciAI/DPM360
Repository for Disease Progression Modeling workbench 360 - An end-to-end deep learning model training framework in python on OMOP data
omic/jailbreak
We jailbreak your medical records and genomics data. For free.
Health-Informatics-UoN/carrot-mapper
Streamlined Data Mapping to OMOP
National-Clinical-Cohort-Collaborative/guide-to-n3c-v1
Research with the National COVID Cohort Collaborative (N3C: https://ncats.nih.gov/n3c)
PheMA/cql-on-omop
Runs CQL phenotype definitions against an OMOP repository
spe-uob/2020-HealthcareLakeETL
FHIR to OMOP using PySpark on AWS Glue
i2b2-omop/i2o-transform
PCORnet Ontology to OMOP - beta!
RADar-AZDelta/Rabbit-in-a-Blender
An ETL pipeline to transform your EMP data to OMOP.
CNAG-Biomedical-Informatics/convert-pheno
A software toolkit for the interconversion of standard data models for phenotypic data
NCBI-Codeathons/OMOPOmics
Patient 'omics data in OMOP format
SAFEHR-data/omopcept
omopcept : an R package to access OMOP conCEPTs (no cons!) and flexible tidyverse compatible R functions for querying and visualising.
SevKohler/Eos
ETL engine to transform openEHR into OMOP. Loads OMOCL configuration files.
answerdigital/oxford-omop-data-mapper
A documentation-centric ETL tool, implementing transformations of a number of common clincial datasets into the OMOP CDM.
centre-for-health-informatics/Django-OMOP
The OMOP Common Data Model(v6) implemented in Django (v3)
bcbi/PreprocessMD.jl
Medically-informed data preprocessing for machine learning
JuliaHealth/OMOPCommonDataModel.jl
Pure Julia implementation of the OMOP Common Data Model (CDM)
miracum/recruit
A Cloud-Native Clinical Trial Recruitment Support System based on HL7 FHIR® and the OMOP CDM
dermatologist/omopcdm-dot-net
:notebook: .Net library for OMOP CDM management
kclhi/ohdsi
:whale2: OHDSI stack Docker configuration
onefact/healthcare-data
Examples of exploring synthetic healthcare data from the Agency for Healthcare Research and Quality in the United States Department of Health and Human Services, and MITRE Corporation.
ABMI/SOCRATex
SOCRATex: Staged Optimization of Curation, Regularization, and Annotation of clinical Text
E-Health/gocdm
GORM models and APIs for CDM v 6.0
sidataplus/demo-etl-dbt-omop
The work of OMOP on the dbt for demo in OHDSI Symposium 2022
stjude-biohackathon/KIDS23-Team3
SCCRIP (Sickle Cell Clinical Research and Intervention Program) established a longitudinal cohort at multiple sites with Sickle Cell Disease (SCD) in 2014 managed by St. Jude Clinical Hematology. A new collaborator for SCCRIP has longitudinal data for 600 SCD patients in OMOP CDM format and this effort is to convert OMOP CDM to SCCRIP format.
elifdy/omopsurvey
omopsurvey python package
NajiaAhmadi/Benchmarking-Analysis-of-PLP-vs-MLR3
This repo contains analysis performed for paper "A comparative patient-level prediction study in OMOP CDM – insights from study on synthetic data".
sidataplus/omop-vocab-loader
Load OHDSI Vocab from Athena into PostgreSQL DB