omop-cdm
There are 34 repositories under omop-cdm topic.
callahantiff/OMOP2OBO
OMOP2OBO: A Python Library for mapping OMOP standardized clinical terminologies to Open Biomedical Ontologies
VectorInstitute/cyclops
Toolkit for evaluating and monitoring AI models in clinical settings
aphp/Cohort360-FrontEnd
A web application to find patients, build cohorts and visualize health records
databricks-industry-solutions/omop-cdm
Unlocking the Power of Health Data With a Modern Data Lakehouse
Health-Informatics-UoN/Carrot-Mapper
Convenient And Reusable Rapid Omop Transformer.
dermatologist/omopfhirmap
OMOP <-> FHIR mapper
RADar-AZDelta/Rabbit-in-a-Blender
An ETL pipeline to transform your EMP data to OMOP.
CNAG-Biomedical-Informatics/convert-pheno
A software toolkit for the interconversion of standard data models for phenotypic data
SevKohler/Eos
ETL engine to transform openEHR into OMOP. Loads OMOCL configuration files.
BIH-MI/ohdsi-compliance
A set of document templates facilitating efficient implementation and operation of an OMOP/OHDSI installation
answerdigital/oxford-omop-data-mapper
A documentation-centric ETL tool, implementing transformations of a number of common clincial datasets into the OMOP CDM.
meerapatelmd/chariot
R Package that supports standardization of clinical data to Athena (athena.ohdsi.org)
fabkury/phea
R package for finding patients in SQL databases using formulas and without using SQL joins
miracum/recruit
A Cloud-Native Clinical Trial Recruitment Support System based on HL7 FHIR® and the OMOP CDM
CNAG-Biomedical-Informatics/convert-pheno-ui
The web UI for Convert-Pheno, a software toolkit for the interconversion of standard data models for phenotypic data
HDRUK/hutch
Former repo for Hutch
meerapatelmd/polyester2
Create a simulation patient population using Synthea and ETL it into the OMOP Common Data Model
elifdy/omop2survey
The omop2survey Python package transforms standardized response codes from the OMOP CDM survey variables into numeric values and simplifies data preparation by providing functionalities for mapping and converting response codes, as well as handling missing data, facilitating easier and more reliable data analysis
pedro-cmat/v6-summary-omop-py
Federated summary algorithm for a RDB following the OMOP CDM and using Vantage6
vemonet/omop-cdm-owl
🦉 An OWL ontology for the OMOP Common Data Model
AndyRae/omop-lite
Get an OMOP CDM Vocabulary database running quickly.
laminlabs/omop
OMOP Common Data Model.
ngiangre/ROMOPOmics
R package to parse datasets into SQLite-friendly tables
qmarcou/computer_assisted_ICD_coding_paper
Companion code repository to Marcou et al. 2024, Creating a computer assisted ICD coding system: Performance metric choice and use of the ICD hierarchy
BorisDelange/LinkR
A web app for visualization and analysis of healthcare data using OMOP CDM.
BorisDelange/LinkR-content
Public content available for LinkR
jaygee-on-github/The-APHRC-LSHTM-MUBAS-IDSR-Project
During the pandemic countries in the African region used data systems they built on top of the WHO Integrated Disease Surveillance and Response (IDSR) framework to track COVID-19 and formulate public health responses. Our IDSR project wrangles these data systems into instances of a common data model and conducts network research on top of them.
RADar-AZDelta/lib_airflow
Custom Airflow operators and hooks, that help to upload our raw hospital data to Google Cloud.
edencehealth/ohdsi-glue
tool to facilitate the setup and ongoing maintenance of OHDSI & EHDEN tool deployments
edencehealth/sqlalchemy_omopcdm
SQLAlchemy Declarative Mapping Models for OHDSI OMOP CDM
miracum/ohdsi-cohort-sync
A tool for backing up OHDSI WebAPI cohorts in a git repository
UK-IPOP/omop-nlp
Script to convert OMOP NOTE table to NOTE_NLP table