orthofinder

There are 6 repositories under orthofinder topic.

  • PlantDr430/BuscoOrthoPhylo

    Wrapper script to concatenate, align, and construct phylogenetic trees of BUSCOs

    Language:Python20214

  • kullrich/orthomap

    orthomap is a python package to extract orthologous maps (in other words the evolutionary age of a given orthologous group) from OrthoFinder/eggNOG results. Orthomap results (gene ages per orthogroup) can be further used to calculate weigthed expression data (transcriptome evolutionary index) from scRNA sequencing objects.

    Language:Python6211

  • kullrich/scTEI

    add any phylogenetically based transcriptome evolutionary index (TEI) to single-cell data objects

    Language:HTML2100

  • lydia-holley/Wyeomyia-smithii-project

    Scripts I wrote as a graduate research assistant while working on the Wyeomyia smithii Genome project for Dr. Elizabeth Cooper's Lab at UNC Charlotte

    Language:Python0100

  • mchunn-1/R_code

    Repository containing code I have written in R.

    0100

  • jlanga/docker-orthofinder

    Dockerfile for OrthoFinder tool

    301