outbreak-analysis

There are 9 repositories under outbreak-analysis topic.

  • epinowcast/epinowcast

    Tools to enable flexible and efficient hierarchical nowcasting of epidemiological time-series using a semi-mechanistic Bayesian model with support for a range of reporting and generative processes.

    Language:R57625721

  • epiverse-trace/cfr

    R package to estimate disease severity and under-reporting in real-time, accounting for reporting delays in epidemic time-series

    Language:R139973

  • epiverse-trace/finalsize

    R package to calculate the final size of an SIR epidemic in populations with heterogeneity in social contacts and disease susceptibility

    Language:R1181327

  • epiverse-trace/epiCo

    R package for statistical and spatiotemporal modeling of epidemiological data for vector-borne diseases in Colombia

    Language:R103610

  • nfidd/nfidd

    Course on nowcasting and forecasting of infectious disease dynamcis

    Language:Stan921564

  • epiverse-trace/episoap

    [Not published - under active development] A Store of Outbreak Analytics Pipelines Provided as Rmarkdown Report Templates

    Language:R53802

  • epiverse-trace/tutorials

    Language:R35962

  • AdithyaOthayoth/Disease-Outbreak-analysis-and-prediction

    This project analyzes a cholera outbreak using Python, integrating environmental, historical, and climatic variables to create a predictive model for early detection and response.

    Language:Jupyter Notebook0100

  • gauravcodepro/bacterial-model-fractions

    risk modelling for virbrio infections and estimating the attributable rates

    Language:Python10