pathogens
There are 23 repositories under pathogens topic.
globalcitizen/2019-wuhan-coronavirus-data
2019 Wuhan Coronavirus data (COVID-19 / 2019-nCoV)
CDCgov/MicrobeTrace
The Visualization Multitool for Molecular Epidemiology and Bioinformatics
bacpop/mandrake
Mandrake 🌿/👨🔬🦆 – Fast visualisation of the population structure of pathogens using Stochastic Cluster Embedding
ncrna/PathogenTrack
A pipeline to identify pathogenic microorganisms from scRNA-seq raw data.
Gibbons-Lab/isb_course_2023
Materials and presentation for the 2023 ISB Microbiome course.
cmmr/EsViritu
Read mapping pipeline for detection and measurement of virus pathogens from metagenomic or clinical data
AABoyles/MicrobeTrace
The Visualization Multitool for Molecular Epidemiology and Bioinformatics
mattmar/dynamAedes
Model to simulate the population dynamics of four Aedes mosquito species.
Camilo-Mora/Diseases
Systematic assessment of the impacts of climate change on human pathogenic diseases
trypanosomatics/aprank
This is APRANK, an Antigenic Protein and Peptide Ranker.
duncanberger/PZQ_POPGEN
Code repository for the publication: "Whole-genome sequencing of Schistosoma mansoni reveals extensive diversity with limited selection despite mass drug administration"
dendrologicus/Dcoronariae_Popgen
Multiplexed SSR marker analysis of Diplocarpon coronariae reveals clonality within samples from Middle Europe and genetic distance from Asian and North American isolates
dendrologicus/PRRC_qPCR_T18
Untangling the pea root rot complex leads to the identification of microbial markers for plant health
emdelponte/pyblastr
Tracking the movement of cereal blast caused by Pyricularia
sib-swiss/hugo-pathogens-portal
Hugo pathogens portal theme
usegalaxy-eu/PathoGFAIR
PathoGFAIR: Galaxy FAIR Workflows for Pathogen Detection and Samples Comparison
ANSES-Ploufragan/PrepMedVet_MinION
galaxy wf detect pathogens in MinION data
ccdmb/PathoPore
PathoPore - Longer Sequences and NextFlow Faster Analysis
duncanberger/SM_VARIATION
Code repository for the manuscript: Extensive transmission and variation in a functional receptor for praziquantel resistance in endemic Schistosoma mansoni
ShwetaNagre/MIP_ORACLE
MIP_ORACLE: Identifies unique target regions with diagnostic significance in pathogens.
akarazeev/LauzHack19
🇨🇭🦠 Service for pathogens and threats identification in hospital environments - SOPHiA Genetics
pmoris/FiMAB-bioinformatics
Course on bioinformatics (linux intro + DNA sequencing pipeline) for the Fighting Malaria Across Borders training programme by the Institute of Tropical Medicine and VLIR-UOS (Belgium)