peak-caller

There are 11 repositories under peak-caller topic.

macs3-project/MACS
MACS -- Model-based Analysis of ChIP-Seq
Language:Cython692 50 520270
LiuLabUB/HMMRATAC
HMMRATAC peak caller for ATAC-seq data
Language:Java96 8 10421
biocore-ntnu/epic
(DEPRECATED) epic: diffuse domain ChIP-Seq caller based on SICER
Language:Python31 7 866
Xinglab/CLAM
CLIP-seq Analysis of Multi-mapped reads
Language:Python26 11 186
JetBrains-Research/span
SPAN Semi-supervised Peak Analyzer
Language:Kotlin9 13 361
Boyle-Lab/F-Seq2
Improving the feature density based peak caller with dynamic statistics
Language:Python6 2 120
nolan-h-hamilton/ROCCO
Robust Open Chromatin Detection via Convex Optimization: Multisample Consensus Peak Calling
Language:Python5 2 00
Biosoft-ru/cpics
ChIP-seq peak caller
Language:C
latur/RMA-Hunter
Web-based tool to systematically analyze and correct reference minor alleles in variant calling data
Language:HTML
metamaden/seq_answers
Sequencing data preprocessing
Language:R2 0
mfansler/zinba
Automatically exported from code.google.com/p/zinba
Language:C2 1