peptide-sequences
There are 22 repositories under peptide-sequences topic.
alexarnimueller/LSTM_peptides
Long short-term memory recurrent neural networks for learning peptide and protein sequences to later design new, similar examples.
wilhelm-lab/dlomix
Python framework for Deep Learning in Proteomics
wilhelm-lab/PROSPECT
Proteomics Mass Spectrometry Datasets for Machine Learning
pgarrett-scripps/peptacular
A spectacularly simple package for working with peptide sequences.
subramv/helixvis
Visualize alpha-helical peptide sequences in Python using helical wheels and wenxiang diagrams
brendaferrari/PepToCodes
Script developed to transform the amino acid smiles to one letter code for later analysis
pgarrett-scripps/ProteinCleaverStreamlitApp
Protein Cleaver is a versatile tool for protein analysis and digestion.
Yan98/DPST
A de novo peptide sequencing transformer
ying-li-python/peptide-match
Using Python to locate a peptide sequence to a reference protein and PTM site
rrrlw/helixvis
Visualize alpha-helical peptide sequences in R using helical wheels and wenxiang diagrams. See https://doi.org/10.21105/joss.01008 for more details.
AshrithSagar/MBM-Project-Epic
Modifications part of the Peptide modifications cycle
ElsevierSoftwareX/SOFTX_2020_149
Pmlbeta: a PyMOL extension for building β-amino acid insertions and β-peptide sequences. To cite this software publication: https://www.sciencedirect.com/science/article/pii/S2352711020303678
pgarrett-scripps/PeptideFragmenterStreamlitApp
A peptide fragment ion calculator made with streamlit
yufongpeng/PeptideSeq.jl
Predict and match digested peptides sequences, their mass m/z and MS/MS spectra with chemical derivatization or post-translational modification.
AlenM5/solid_phase_peptide_synthesis_calculator
This is an early stage calculator that uses Python to automate the time-consuming calculation components necessary for solid phase peptide synthesis (SPPS). At its current version (v1), the calculator allows calculation of the molecular weight of a desired peptide sequence, the mass of solid support resin needed for SPPS and the percentage yield
JoshuaKoopmans/SignalPeptideClassifier
Given files with sequences containing signal peptides and sequences not containing signal peptides, multiple classifiers were tested to see which performs best in the classification of signal peptide sequences.
mirjamdebruin/chlorinated_peptides
Python Code for Peptide Sequencing of plasma after Chlorine Exposure
Pranshu-Bahadur/RetentionNetwork-for-Anti-Cancer-Peptide-Classification
Torch and TF implementation of Retention Network modules.
reoyamanaka/biological_sequence_locator
Locates genomic and peptide sequences for biological analysis.
yuvisidhu19/Feature-extraction-using-Peptides-and-Peptider
R-script to extract 56 features from a given peptide sequence and handle exceptions in the input file
abhijeetsingh1704/ATP_for_peptide
This programs calculates the approximate energy (ATP) required to form a peptide chain
Ramy-Badr-Ahmed/Bioinformatics-Misc-Scripts
Miscellaneous Scripts in Bioinformatics