phenomics
There are 32 repositories under phenomics topic.
GeneDx/phenopy
Phenotype comparison tools using semantic similarity.
recursionpharma/maes_microscopy
Official repo for Recursion's accepted spotlight paper at NeurIPS 2023 Generative AI & Biology workshop.
monarch-initiative/phenol
phenol: Phenotype ontology library
drseb/HPO-translations
Internationalisation of the HPO content
phenopype/phenopype
A phenotyping pipeline for Python
terraref/reference-data
Coordination of Data Products and Standards for TERRA reference data
kclhi/phenoflow
Standardise and share computable disease definitions
drseb/HPO-archive
HPO archive of the ontology and annotations
Computational-Plant-Science/3D_model_traits_demo
Computation of root phenes from 3D point clouds.
phytooracle/automation
Modular, Scalable Phenomic Data Processing Pipelines
drseb/phenopposites
Project to generate phenotype opposite_of relationships and investigate the effect on ontology-based algorithms
Phenomics/phenomics.github.io
Website for the Phenomics and Machine Learning Team
obophenotype/zebrafish-phenotype-ontology-build
:fish: Zebrafish Phenotype Ontology: Build Tools (OBSOLETE)
Asad-Ismail/SMN
Scaleable multitask Network
Computational-Plant-Science/DIRT-storage
Automatic estimation of storage root length, diameter and volume.
CougPhenomics/cougphenomics.github.io
my snippets and notes for compact plants phenomics center at WSU
drseb/hpoweb
HPO web browser created with Vaadin
kiteiru/nsu-diploma-wheat
This is repository of my bachelor degree graduation work. Method was developed in purpose to upgrade accuracy and efficiency of wheat spikelets detection on images.
neurogenomics/phenomix
Explore the phenome ✨🎆✨
sauriiiin/lidetector
LI Detector analytical pipeline for colony-based high-throughput screens.
zjwinn/Phenomic-vs-GP-A-Comparison-of-Prediction-Accuracies-for-GY-in-HWW
This is a public repository for relevant code from the publication of the same name.
derekmichaelwright/AGILE_LDP_GWAS_Phenology
Focusing the GWAS Lens on days to flower using latent variable phenotypes derived from global multi-environment trials. The Plant Genome. (2022) e20269.
mukherjeevaskar267/CRISPRi_Screening_AceticAcid
Phenotypic screening of a CRISPRi strain library [Smith et 2017, Mol Syst Biol (2017)13:913] for acetic acid tolerance targeting essential and respiratory essential genes in Saccharomyces cerevisiae
PelFritz/Barley_HEB25_Project
Scripts for the HEB25_population
cct-datascience/ardn-genomes-to-fields
Code used to generate Genomes to Fields data in BrAPI format from Imagebreed for use by the Agricultural Research Data Network (ARDN)
cct-datascience/ardn-terra-ref
Code used to generate TERRA REF data in BrAPI format for use by the Agricultural Research Data Network (ARDN) and publication at the USDA National Agriculture Library
DrMarkYoung/Thalattosuchia_Phylo_2024
R scripts for the Zoological Journal of the Linnean Society thalattosuchian phylogenetic analyses (https://academic.oup.com/zoolinnean/article-abstract/200/2/547/7513652) and (https://academic.oup.com/zoolinnean/article-abstract/201/3/zlae079/7713265)
drseb/hpo-obo-qc
The QC software for the OBO version of HPO
drseb/hpo-owl-qc
The QC software for the OWL version of HPO (only text-checks, not so much logic included)
phenoflow/hdr-caliber-phenome-portal
HDR UK National Phenotype Library
phenoflow/t2dm
Type 2 Diabetes Mellitus phenotype as a structured phenotype definition, as produced by the Phenoflow architecture.