phenomics

recursionpharma/maes_microscopy

Official repo for Recursion's accepted spotlight paper at NeurIPS 2023 Generative AI & Biology workshop.

monarch-initiative/phenol

phenol: Phenotype ontology library

drseb/HPO-translations

Internationalisation of the HPO content

Computational-Plant-Science/plantit

phenopype/phenopype

A phenotyping pipeline for Python

terraref/reference-data

Coordination of Data Products and Standards for TERRA reference data

kclhi/phenoflow

Standardise and share computable disease definitions

drseb/HPO-archive

HPO archive of the ontology and annotations

Computational-Plant-Science/3D_model_traits_demo

Computation of root phenes from 3D point clouds.

phytooracle/automation

Modular, Scalable Phenomic Data Processing Pipelines

drseb/phenopposites

Project to generate phenotype opposite_of relationships and investigate the effect on ontology-based algorithms

Phenomics/phenomics.github.io

Website for the Phenomics and Machine Learning Team

obophenotype/zebrafish-phenotype-ontology-build

:fish: Zebrafish Phenotype Ontology: Build Tools (OBSOLETE)

Asad-Ismail/SMN

Scaleable multitask Network

Computational-Plant-Science/DIRT-storage

Automatic estimation of storage root length, diameter and volume.

CougPhenomics/cougphenomics.github.io

my snippets and notes for compact plants phenomics center at WSU

drseb/hpoweb

HPO web browser created with Vaadin

kiteiru/nsu-diploma-wheat

This is repository of my bachelor degree graduation work. Method was developed in purpose to upgrade accuracy and efficiency of wheat spikelets detection on images.

zjwinn/Phenomic-vs-GP-A-Comparison-of-Prediction-Accuracies-for-GY-in-HWW

This is a public repository for relevant code from the publication of the same name.

derekmichaelwright/AGILE_LDP_GWAS_Phenology

Focusing the GWAS Lens on days to flower using latent variable phenotypes derived from global multi-environment trials. The Plant Genome. (2022) e20269.

mukherjeevaskar267/CRISPRi_Screening_AceticAcid

Phenotypic screening of a CRISPRi strain library [Smith et 2017, Mol Syst Biol (2017)13:913] for acetic acid tolerance targeting essential and respiratory essential genes in Saccharomyces cerevisiae

PelFritz/Barley_HEB25_Project

Scripts for the HEB25_population

sauriiiin/lidetector

LI Detector analytical pipeline for colony-based high-throughput screens.

cct-datascience/ardn-genomes-to-fields

Code used to generate Genomes to Fields data in BrAPI format from Imagebreed for use by the Agricultural Research Data Network (ARDN)

cct-datascience/ardn-terra-ref

Code used to generate TERRA REF data in BrAPI format for use by the Agricultural Research Data Network (ARDN) and publication at the USDA National Agriculture Library

drseb/hpo-obo-qc

The QC software for the OBO version of HPO

drseb/hpo-owl-qc

The QC software for the OWL version of HPO (only text-checks, not so much logic included)

phenoflow/hdr-caliber-phenome-portal

HDR UK National Phenotype Library

phenoflow/t2dm

Type 2 Diabetes Mellitus phenotype as a structured phenotype definition, as produced by the Phenoflow architecture.