photosynthesis
There are 40 repositories under photosynthesis topic.
HarveyBates/Phenobottle
An open-source Raspberry-Pi based photobioreactor for cultivating and assessing physiology (photosynthesis & productivity) in microscopic algae.
HarveyBates/Open-JIP
An open-source Arduino based chlorophyll fluorometer for quantifying photosynthesis in photosynthetic organisms.
HPQC-LABS/FeynDyn
Type an M x M matrix for your open quantum system Hamiltonian, and give a spectral density (analytic or numerical). FeynDyn gives the density matrix dynamics according to the Leggett-Caldeira bath or the Feynman-Vernon bath at any temperature. Can do up to 16 qubits (65536 levels) and infinitely many bath modes. Email nike@hpqc.org for the latest version or any questions.
mdekauwe/GDAY
GDAY simulates carbon, nitrogen & water dynamics
trevorkeenan/gpp-co2
Code to reproduce the analysis and figures in 'A constraint on historic growth in global photosynthesis due to increasing CO2' Keenan et al. 2021. Nature https://www.nature.com/articles/s41586-021-04096-9
jnnsbrr/PhotoBioDynamics
Small model to simulate biomass production on a global scale. Products are Gross Primary Production (GPP), Net Primary Production (NPP). It is based on a modified version of the Farquhar approach (Haxeltine and Prentice 1996, Farquhar et al. 1980). Where possible, it uses vectorization and parallelization and dynamically downloads latest av
cropbox/LeafGasExchange.jl
🍃 coupled leaf gas-exchange model
ManuelLamothe/RapidACi
R scripts for automatic correction of Rapid A-Ci curves
cropbox/plants2020
coupled leaf gas-exchange model for C₄ leaves comparing stomatal conductance models
MaisaMilena/WWDC18_Photosynthesis
[accepted] This is my playground submitted for WWDC18 Scholarship
SmartBioTech/PBR-ControlScripts
Control Scripts for Photon Systems Instruments (PSI) Bioreactor Client
dkauf42/PIcurves
Functions and a walkthrough to visualize common photosynthesis-irradiance relationships
LukeEcomod/APES_Jan2016
APES (Atmosphere - Plant - Exchange Simulator) codes in Matlab
MarkusLoew/Li6400helper
Helper functions for Licor 6400 IRGA gas exchange files
Prikaziuk/FvCB_photosynthesis
GUI for the C3 photosynthesis Farquhar, von Caemmerer & Berry model (1980)
savetz/AppleII-photosynthesis
Apple II source code, in the Forth language, for a commercial photosynthesis educational program
Aariq/li6400-data-wrangling
the LI6400 portable photosynthesis meter exports data as a series of poorly formatted .xls files. If you've used "add remark" to indicate sample ID, these are shown as rows, not a separate column. This script extracts relevant data, and moves the sample ID information from remarks into a column.
ess-dive-community/essdive-leaf-gas-exchange
READY TO USE. Documentation associated with the leaf-level gas exchange data and metadata reporting format for the ESS-DIVE repository
Fabian11lrg/CobraPy-Model-Photosynthesis
CobraPy - Chlorella vulgaris iFR947 GSM model - Programming Documentation - Python, pandas, Jupyter Notebooks
MarkusLoew/FitAQ
Yet another R package to analyse the light response of photosynthesis
Prikaziuk/Spe
Flux partitioning: NEE -> GPP
SeBassTian23/photosynthesis-scheme
Generate a scheme of the photosynthetic machinery for presentations or slides.
SeBassTian23/Visual-Phenomics-Python
Import data output from Visual Phenomics into a DataFrame
AndrePinheiroPT/ChloroplastCode
Do you like plants? If yes, check out my program which tries simulate a chloroplast!
ARCHIMED-platform/archimed-platform.github.io
The website for the ARCHIMED platform
bioatmosphere/UVAFMEVOC2017
Scripts and Data underlying the 2017 Ecological Modelling paper on UVAFME-VOC.
lukaseamus/CSP
Data and R code accompanying article 10.1111/gcb.16299 in Global Change Biology
lukaseamus/Laminaria-pigments
Data and R code accompanying article 10.3354/meps13886 in Marine Ecology Progress Series.
nullptr3/lsp-photodiode
PAR Toolkit for LSP @ UCSC
pwendering/ArabidopsisCoreModel
Platform for further development of the Arabidopsis core metabolic model
pwendering/AraTModel
Integration of temperature-dependent constraints into a metabolic model of Arabidopsis thaliana
bluegreen-labs/rpmodel
An R implementation of the P-model (new fork).
HarveyBates/PARmeter
Open-source PAR Meter
jonathanschultzNU/Redox-chain-efficiency
This code package simulates the time evolution of a multi-site electron transfer chain, with quantum yield, energy efficiency, and rate matrices as key outputs. The simulation models the rates and population dynamics of multi-step hopping with inter-cofactor separations and driving forces (ΔG) as input parameters.
michele-grieco/Predict-photosynthesis
Predicting Photosynthesis with Ensemble Models and Neural Networks