phylodynamics
There are 16 repositories under phylodynamics topic.
evolbioinfo/phylodeep
PhyloDeep is a python library for parameter estimation and model selection from phylogenetic trees, based on deep learning.
mccoy-devs/mccoy
The McCoy phylodynamics workflow
mrc-ide/sarscov2-b.1.1.7
Assessing transmissibility of SARS-CoV-2 lineage B.1.1.7 in England (peer-reviewed)
josegcpa/clonal_dynamics
Code repository for the longitudinal and phylodynamic analysis in "The longitudinal dynamics and natural history of clonal haematopoiesis"
Dhihram/caIRA
version 0.1.3
laduplessis/beast2_bdskysa_ebov_example
Example for BEAST v2.5 paper
maxbiostat/FMDV_AMERICA
Tracking the spread of Foot-and-Mouth Disease virus in South America
maxbiostat/PhD_Thesis
My PhD Thesis - Institute of Evolutionary Biology, University of Edinburgh, 2018
ViennaRNA/CHIKV
Nextstrain community build 'Molecular epidemiology of Chikungunya virus'
ViennaRNA/VEEnext
Nextstrain community build 'Molecular epidemiology of Venezuelan equine encephalitis complex viruses'
NIH-BIGVI-PAKISTAN/ncov
Genomic epidemiology of novel coronavirus (SARS-CoV-2) in Pakistan
ktmeaton/plague-global-phylo-paper
Plague Global Phylogeny Manuscript
maxbiostat/second_year_poster
my second year poster for the Graduate School Poster Day 2016