phylodynamics

There are 16 repositories under phylodynamics topic.

evolbioinfo/phylodeep
PhyloDeep is a python library for parameter estimation and model selection from phylogenetic trees, based on deep learning.
Language:Python19 4 15
mccoy-devs/mccoy
The McCoy phylodynamics workflow
Language:HTML4 3 44
mrc-ide/sarscov2-b.1.1.7
Assessing transmissibility of SARS-CoV-2 lineage B.1.1.7 in England (peer-reviewed)
Language:HTML4 10 06
josegcpa/clonal_dynamics
Code repository for the longitudinal and phylodynamic analysis in "The longitudinal dynamics and natural history of clonal haematopoiesis"
Language:R3 1 01
Dhihram/caIRA
version 0.1.3
Language:R20
kgustafIDM/disease-mobility
Language:MATLAB1 2 00
laduplessis/beast2_bdskysa_ebov_example
Example for BEAST v2.5 paper
Language:Python1 2 12
maxbiostat/FMDV_AMERICA
Tracking the spread of Foot-and-Mouth Disease virus in South America
Language:Jupyter Notebook1 6 1280
maxbiostat/PhD_Thesis
My PhD Thesis - Institute of Evolutionary Biology, University of Edinburgh, 2018
Language:TeX1 3 90
ViennaRNA/CHIKV
Nextstrain community build 'Molecular epidemiology of Chikungunya virus'
1 6 01
ViennaRNA/VEEnext
Nextstrain community build 'Molecular epidemiology of Venezuelan equine encephalitis complex viruses'
1 5 01
NIH-BIGVI-PAKISTAN/ncov
Genomic epidemiology of novel coronavirus (SARS-CoV-2) in Pakistan
0 1 00
ktmeaton/plague-global-phylo-paper
Plague Global Phylogeny Manuscript
Language:HTML2 0
maxbiostat/second_year_poster
my second year poster for the Graduate School Poster Day 2016
Language:TeX3 2
philsf/trepid_paper
Language:TeX2 18
Wytamma/pybeast
Language:Python1 0

phylodynamics

evolbioinfo/phylodeep

mccoy-devs/mccoy

mrc-ide/sarscov2-b.1.1.7

josegcpa/clonal_dynamics

Dhihram/caIRA

kgustafIDM/disease-mobility

laduplessis/beast2_bdskysa_ebov_example

maxbiostat/FMDV_AMERICA

maxbiostat/PhD_Thesis

ViennaRNA/CHIKV

ViennaRNA/VEEnext

NIH-BIGVI-PAKISTAN/ncov

ktmeaton/plague-global-phylo-paper

maxbiostat/second_year_poster

philsf/trepid_paper

Wytamma/pybeast