phylogenetic-placement

There are 10 repositories under phylogenetic-placement topic.

  • usher

    yatisht/usher

    Ultrafast Sample Placement on Existing Trees

    Language:C++1241315642

  • lczech/gappa

    A toolkit for analyzing and visualizing phylogenetic (placement) data

    Language:C++577287

  • phylo42/PEWO

    Phylogenetic Placement Evaluation Workflows : Benchmark placement software and different reference trees

    Language:Python124159

  • Grice-Lab/HmmUFOtu

    An HMM and Phylogenetic Placement based Ultra-Fast Taxonomy Assignment Tool for 16S sequencing

    Language:C++116129

  • phylo42/RAPPAS

    Rapid, Alignment-free, Phylogenetic Placement via Ancestral Sequences

    Language:Java94123

  • nf-core/phyloplace

    nf-core/phyloplace is a bioinformatics best-practice analysis pipeline that performs phylogenetic placement with EPA-NG.

    Language:Groovy716043

  • lczech/thesis

    My dissertation / PhD thesis

    Language:TeX4500

  • naturalis/barcode-constrained-phylogeny

    Pipeline for building topologically-constrained phylogenies from DNA barcode data

    Language:Python29783

  • fridalp/eutardigrade_eDNA

    Supplementary files for the paper "Environmental DNA metabarcoding of Danish soil samples reveals new insight into the hidden diversity of eutardigrades in Denmark"

    Language:R0100

  • wiegertj/BAD

    Tool for estimating the difficulty of phylogenetic placements

    Language:Python0100