phylogenetic-tree
There are 16 repositories under phylogenetic-tree topic.
YuLab-SMU/tidytree
:shower:A Tidy Tool for Phylogenetic Tree Data Manipulation
bioinfweb/TreeGraph2
A feature rich and easy to use phylogenetic tree editor
Changwanseo/FunVIP
Fungal Identification Pipeline
zengxiaofei/busco-tree
A pipeline to construct phylogenetic tree using BUSCOs
dfornika/tree-with-metadata
Draw a phylogenetic tree, along with a table of metadata
Niloth-p/Phylogenetic-Tree-construction-using-Agglomerative-and-Divisive-Hierarchical-clustering
The prog is written to construct the phylogenetic tree (dendrogram) based on DNA/Protein sequences of species given in a dataset using Agglomerative and Divisive Hierarchical Clustering and to compare Agglomerative and Divisive methods
pebgroup/Global-plant-diversity
Code and data description to reproduce Tietje et al. (2022) Global variation in diversification rate and species richness are unlinked in plants (https://doi.org/10.1073/pnas.2120662119)
sirineFoudili/DNA-comparison-and-alignment-
web application for DNA comparison, alignment and phylogenetic tree. Released on 2020.
anicksaha/neighbor_joining
Nei-Saitou neighbor-joining algorithm for phylogeny construction/inference. Neighbor joining is a bottom-up (agglomerative) clustering method for the creation of phylogenetic/evolutionary trees.
fethalen/orthoquoll
A stand-alone tool for evaluating simple statistics of orthologs
kmampent/CacheTD
Implementation of the tree triplet distance algorithms from our paper "Cache oblivious algorithms for computing the triplet distance between trees", published in ESA 2017
sophiagosselin/tANI_tool
Script for creating a tANI distance matrix for use in phylogenetic reconstruction.
charlesrocabert/puutools
Easy-to-use C++ library for the live tracking of lineage and coalescence trees in individual-based forward-in-time simulations.
laelbarlow/sort_seqs_by_clade
Script for sorting FASTA sequences by clade in a given tree topology.
BenbowLab/Benin-NGS
Example files for Benin NGS capacity building project
tomekkorbak/computational-genomics-experiments
A couple of assignments I did for a course in computational (molecular) biology @ University of Warsaw