pileup

There are 11 repositories under pileup topic.

open2c/coolpuppy
A versatile tool to perform pile-up analysis on Hi-C data in .cool format.
Language:Python78 6 10811
Koeng101/dnadesign
A Go package for designing DNA.
Language:Go23 3 460
magnitov/pentad
A simple tool to perform the calculation and visualization of the average chromatin A/B compartment.
Language:Python13 1 91
edgardomortiz/sam2consensus
Get the consensus sequences from SAM (and BAM) files, ignoring the reference
Language:Python10 2 14
CLIMB-COVID/maptide
Base frequencies for BAM files.
Language:Rust4 5 00
TC-Hewitt/MuTrigo
Pipeline for gene candidate discovery based on mutagenesis. Featured in gene cloning research published in Nature (DOIs: 10.1038/s41467-020-14937-2, 10.1038/s41467-021-23738-0, 10.1038/s41477-021-00971-5), Molecular Plant (DOI: 10.1016/j.molp.2021.05.010) and New Phytologist (DOI: 10.1111/nph.17075).
Language:Python3 0 00
celalp/parse_pileup
Parse pileup files, generate consensus fasta and calculate heteroplasmy per nucleotide
Language:Python1 0 00
lvn3668/pileupnotationvariantcaller
Variant caller from pileup notation / samtools alignment
Language:Python1 1 0
kohrachel/PYTHIA_Summer_24
PYTHIA files for simulating pp collisions at LHC energies with pileup
Language:C++0 1 00
wennj/pileupReformater
Convert output from Samtools pileup into a matrix.
Language:Java0 1 00
ogty/pile-up-cardboard-boxes
📦 Pile up cardboard boxes 📦
Language:TypeScript2 0