plasmodium-falciparum

There are 9 repositories under plasmodium-falciparum topic.

  • pablocarderam/genetargeter

    Creates a construct developed by the Niles Lab at MIT, designed to deliver a 3' UTR post-transcriptional regulatory element payload to a specific given gene in Plasmodium falciparum.

    Language:Python2210
  • bguo068/posseleff_empirical

    Nextflow pipeline for analyzing empirical WGS data for the effect of positive selection on IBD-based inference

    Language:Nextflow1100
  • colbyford/Ghana_CSP_Haplotypes

    Genetic variations of Plasmodium falciparum circumsporozoite protein and the impact on interactions with human immunoproteins and malaria vaccine efficacy - By Dieng and Ford et al.

    Language:PostScript1200
  • kevin-wamae/PlasmoSeq-DualTech

    A pipeline for variant calling from P. falciparum short reads generated from Illumina and ONT libraries

    Language:Python1202
  • ArhamWasti/Plasmodium-Falciparum-Inhibitor-Detection

    Utilizing 3D GCN machine learning models to expedite and improve malaria drug discovery through efficient inhibitor detection

    Language:Jupyter Notebook0100
  • nunososorio/Pfalciparum-ReducedACT-Susceptibility

    This repository contains data and code for our analysis of the genome of a Plasmodium falciparum strain with reduced susceptibility to Artemisinin-Based Combination Therapy (ACT) drugs. We performed whole-genome sequencing of the HSOG3 clinical isolate and compared it with a large dataset of global P. falciparum samples.

    Language:Python0100
  • Rcoppee/Scan_gene_coverage

    Calculating the coverage depth for each coding gene and the percentage of each gene covered at ≥ 10X depth.

    Language:Python0100
  • sjohri20/PlasmodiumSynchronisedCellAtlas

    Effect of temperature stress on Plasmodium Falciparum. Code for data analysis. Rshiny app for data exploration.

    Language:R0100
  • colbyford/pfHRP_MLModel

    Modeling Plasmodium falciparum Diagnostic Test Sensitivity using Machine Learning with Histidine-Rich Protein 2 Variants

    Language:PostScript20