pool-sequencing

There are 6 repositories under pool-sequencing topic.

  • grenepipe

    moiexpositoalonsolab/grenepipe

    A flexible, scalable, and reproducible pipeline to automate variant calling from raw sequence reads, with lots of bells and whistles.

    Language:Python9445821

  • lczech/genesis

    A library for working with phylogenetic and population genetic data.

    Language:C++579512
  • grenedalf

    lczech/grenedalf

    Toolkit for Population Genetic Statistics from Pool-Sequenced Samples, e.g., in Evolve and Resequence experiments

    Language:C++353362

  • jeffersonfparil/poolgen

    Quantitative and population genetics analyses of populations, pools, half-sib/full-sib families, and polyploids

    Language:Rust31180

  • MartaPelizzola/ACER

    Adapted chi-squared and CMH test to evolve and resequenced data. Includes drift and pool sequencing variance in the tests

    Language:R3111

  • ozankiratli/poolseq-VCF2FREQ

    A tool to convert poolseq VCF to allele frequencies.

    Language:Shell1100