popgen
There are 29 repositories under popgen topic.
sgkit-dev/sgkit
Scalable genetics toolkit
hardingnj/xpclr
Code to compute the XP-CLR statistic to infer natural selection
bodkan/slendr
Population genetic simulations in R 🌍
BioJulia/PopGen.jl
Population Genetics in Julia
bodkan/admixr
An R package for reproducible and automated ADMIXTOOLS analyses
novikovalab/piawka
The powerful `awk` script to calculate pi, Dxy and Fst in polyploid VCF files with mixed-ploidy groups support
statgenlmu/coala
A Framework for Coalescent Simulation in R
Tom-Jenkins/utility_scripts
Scripts for population genetics analysis
aprilweilab/grgl
Genotype Representation Graph Library
GenomicsAotearoa/Kakapo
Scripts and code for Kākāpō genomic data
mnavascues/ABCRFtutorial
Crash Course on Approximate Bayesian Computation in Population Genetics
DL42/ParallelPopGen
This is a package of APIs for performing population genetics simulations and analyses in parallel on the GPU.
jyanglab/g3tools
An R packages for Genomics, quantGen, and popGen studies, especially for crop species.
pdimens/PopGenSims.jl
Create population genetics simulations
bradduthie/Inbreeding
Population genetic model of polygynous biparental inbreeding with no polyandry
duncanberger/PZQ_POPGEN
Code repository for the publication: "Whole-genome sequencing of Schistosoma mansoni reveals extensive diversity with limited selection despite mass drug administration"
esohkevin/CamPopStruct
Fine-scale genetic structure in South Western Cameroon
jyanglab/agro931-project
A demo project for class AGRO/ASCI-931: population genetics
ainacolovila/PopHumanVar
PopHumanVar is an interactive app created with Shiny, that can be used for the functional characterization and prioritization of genomic variants
DL42/SFS_DFE_categorical
Calculates the maximum likelihood DFE for a SFS (selected) based on the categorical distribution and a reference SFS (neutral)
duncanberger/schisto_livestock_hybrids
Code repository for the publication: "Genomic evidence of contemporary hybridization between Schistosoma species"
bajicv/popgen_intro
Introduction to Human Population Genetics
HobanLab/USBG_Hybrid_Acorns
Analyzing the offspring of 11 Quercus muehlenbergii individuals at the Morton Arboretum for hybridization and predictors of pollination success.
r02ap19/DFE_Wright-Fisher01
An individual-based Wright-Fisher model with infinite site genomes and customizable distribution of fitness effects
uranus238/RAD-MIG_tools
tools for RAD-seq, MIG-seq processing and analysis
bodkan/globe-slendr-2023-03-22
Simulation workshop for the Globe Institute, University of Copenhagen
mmaalvarez/deep_ancestry
Tool for inferring global ancestry proportions in admixed samples using deep learning
santiagosnchez/genetic_drift
Shiny app with a genetic drift simulator