promoters

There are 11 repositories under promoters topic.

  • MAGICS-LAB/DNABERT_2

    [ICLR 2024] DNABERT-2: Efficient Foundation Model and Benchmark for Multi-Species Genome

    Language:Shell3121012272

  • saketkc/gencode_regions

    Extract 3'UTR, 5'UTR, CDS, Promoter, Genes, Introns, Exons from GTF files

    Language:Jupyter Notebook1036852

  • CharlesSanfiorenzo/Bioinformatics

    Bioinformatics N' Stuff

    Language:Shell5310
  • PromKappa-1.0-makes-Objective-Digital-Stains

    Gagniuc/PromKappa-1.0-makes-Objective-Digital-Stains

    PromKappa 1.0 is a complete application made in Visual Basic 6.0 (VB6) that generates Objective Digital Stains (aka DNA patterns).

    Language:Visual Basic 6.05102
  • PromKappa-3.0-Objective-Digital-Stains-in-VB6

    Gagniuc/PromKappa-3.0-Objective-Digital-Stains-in-VB6

    PromKappa 3.0 is a complete application made in Visual Basic 6.0 (VB6) that generates Objective Digital Stains (aka DNA patterns). The main output of the application consists of a series of images that are saved in the 'chart' (or 'chart_comp') folder and which can be later analyzed using different methods.

    Language:HTML4201

  • pughlab/BCa_ATACSEQ_Project

    This repository contains custom code used for analysis in El Ghamrasni et al.,

    Language:R2501

  • ErillLab/pHunter

    Python second-order approximation to the PromoterHunter code

    Language:Python1600

  • MetabolicEngineeringGroupCBMA/YeastPathwayKit

    Yeast pathway kit promoter and terminator vectors and other related public information. Do not put secret information here.

    Language:Jupyter Notebook0200

  • yenon118/SoybeanGenVarX

    The Soybean Genomic Variations Explorer (Soybean GenVarX) is a toolset that consists of promoter region component and CNV component for users to perform queries, visualize data, and conduct annotations using genotypic and phenotypic differences.

    Language:PHP0100

  • ytanaka-bio/cisMultiDeep

    Workflow to identify functional cis-regulatory regions for each annotated cell type

    Language:Python0100

  • yenon118/GenVarX

    The Genomic Variations Explorer (GenVarX) is a toolset that consists of promoter region component and CNV component for users to perform queries, visualize data, and conduct annotations using genotypic and phenotypic differences.

    Language:JavaScript10