protein-embedding

There are 8 repositories under protein-embedding topic.

  • LirongWu/awesome-protein-representation-learning

    Awesome Protein Representation Learning

    59323168

  • tbepler/protein-sequence-embedding-iclr2019

    Source code for "Learning protein sequence embeddings using information from structure" - ICLR 2019

    Language:Python253112575

  • LirongWu/MAPE-PPI

    Code for ICLR 2024 (Spotlight) paper "MAPE-PPI: Towards Effective and Efficient Protein-Protein Interaction Prediction via Microenvironment-Aware Protein Embedding"

    Language:Python2242637

  • tbepler/prose

    Multi-task and masked language model-based protein sequence embedding models.

    Language:Python953419

  • bioinfodlsu/phage-host-prediction

    Published in PLOS ONE. Phage-host interaction prediction tool that uses protein language models to represent the receptor-binding proteins of phages. It presents improvements over using handcrafted sequence properties and eliminates the need to manually extract and select features from phage sequences

    Language:Jupyter Notebook10222

  • bioinfodlsu/PHIStruct

    Phage-host interaction prediction tool that incorporates protein structure information in representing receptor-binding proteins (RBPs). It improves performance especially for phages with RBPs that have low sequence similarity to those of known phages

    Language:Jupyter Notebook30

  • OpenProteinAI/openprotein-python

    Simple python interface for the OpenProtein.AI REST API.

    Language:Python3120

  • Eereenah/gnn-thesis

    Code for Binding Affinity Prediction with Graph Neural Networks

    Language:Jupyter Notebook1211