protein-representation-learning

There are 9 repositories under protein-representation-learning topic.

LirongWu/awesome-protein-representation-learning
Awesome Protein Representation Learning
598 23 168
DeepGraphLearning/GearNet
GearNet and Geometric Pretraining Methods for Protein Structure Representation Learning, ICLR'2023 (https://arxiv.org/abs/2203.06125)
Language:Python263 10 6627
tbepler/protein-sequence-embedding-iclr2019
Source code for "Learning protein sequence embeddings using information from structure" - ICLR 2019
Language:Python253 11 2575
LirongWu/MAPE-PPI
Code for ICLR 2024 (Spotlight) paper "MAPE-PPI: Towards Effective and Efficient Protein-Protein Interaction Prediction via Microenvironment-Aware Protein Embedding"
Language:Python233 2 639
ISYSLAB-HUST/ProtFlash
ProtFlash: A lightweight protein language model
Language:Python99 2 33
DeepGraphLearning/SiamDiff
Code for Pre-training Protein Encoder via Siamese Sequence-Structure Diffusion Trajectory Prediction (https://arxiv.org/abs/2301.12068)
Language:Python38 4 45
HySonLab/Protein_Redesign
Complex-based Ligand-Binding Proteins Redesign by Equivariant Diffusion-based Generative Models
Language:Python38 4 35
BorgwardtLab/PST
Protein Structure Transformer (PST): Endowing pretrained protein language models with structural knowledge
Language:Python30 4 3
LirongWu/PSC-CPI
Code for AAAI 2024 paper "PSC-CPI: Multi-Scale Protein Sequence-Structure Contrasting for Efficient and Generalizable Compound-Protein Interaction Prediction"
Language:Python24 2 41